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PSME_00029909-RA


Description : (at3g47550 : 228.0) RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to salt stress; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3675 (InterPro:IPR022143), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT5G62460.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 456.0) & (original description: no original description)


Gene families : OG_42_0000370 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000370_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00029909-RA
Cluster HCCA clusters: Cluster_679

Target Alias Description ECC score Gene Family Method Actions
A4A49_38890 No alias hypothetical protein 0.01 Orthogroups_2024-Update
Brara.J00118.1 No alias E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Glyma.02G107500 No alias RING/FYVE/PHD zinc finger superfamily protein 0.02 Orthogroups_2024-Update
Glyma.07G208100 No alias RING/FYVE/PHD zinc finger superfamily protein 0.02 Orthogroups_2024-Update
LOC_Os01g03100 No alias protein binding protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os11g38800 No alias zinc finger family protein, putative, expressed 0.02 Orthogroups_2024-Update
MA_202212g0010 No alias (at5g62460 : 145.0) RING/FYVE/PHD zinc finger... 0.02 Orthogroups_2024-Update
MA_576984g0010 No alias (at2g01275 : 90.9) RING/FYVE/PHD zinc finger superfamily... 0.03 Orthogroups_2024-Update
PSME_00004790-RA No alias (at3g47550 : 182.0) RING/FYVE/PHD zinc finger... 0.02 Orthogroups_2024-Update
PSME_00039831-RA No alias (at5g62460 : 231.0) RING/FYVE/PHD zinc finger... 0.02 Orthogroups_2024-Update
Sobic.003G144600.1 No alias E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Sobic.009G223900.2 No alias E3 ubiquitin ligase 0.01 Orthogroups_2024-Update
Solyc02g091230 No alias RING/FYVE/PHD zinc finger superfamily protein (AHRD V3.3... 0.01 Orthogroups_2024-Update
Solyc05g008390 No alias RING/FYVE/PHD zinc finger superfamily protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Sopen01g031300 No alias Protein of unknown function (DUF3675) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR011016 Znf_RING-CH 90 135
IPR022143 DUF3675 141 257
No external refs found!