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  5. PSME_00029950-RA

PSME_00029950-RA


Description : (at5g42190 : 192.0) Similar to SKP1 in yeast and humans which are involved in mitotic cell cycle control and ubiquitin mediated proteolysis.; E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein; CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: S phase kinase-associated protein 1 (TAIR:AT1G75950.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 384.0) & (original description: no original description)


Gene families : OG_42_0000356 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000356_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00029950-RA
Cluster HCCA clusters: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
At3g21860 No alias SKP1-like protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSX8] 0.03 Orthogroups_2024-Update
GRMZM2G060394 No alias SKP1-like 4 0.02 Orthogroups_2024-Update
HORVU5Hr1G084140.4 No alias ASK-type linker component of SCF E3 ubiquitin ligase complexes 0.02 Orthogroups_2024-Update
LOC_Os09g10200 No alias Skp1 family, dimerisation domain containing protein, expressed 0.03 Orthogroups_2024-Update
PSME_00003855-RA No alias (at5g42190 : 196.0) Similar to SKP1 in yeast and humans... 0.04 Orthogroups_2024-Update
PSME_00010537-RA No alias (at1g75950 : 182.0) SKP1 is core component of the SCF... 0.03 Orthogroups_2024-Update
PSME_00013848-RA No alias (at5g42190 : 187.0) Similar to SKP1 in yeast and humans... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Predicted GO
MF GO:0004525 ribonuclease III activity IEP Predicted GO
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Predicted GO
MF GO:0004673 protein histidine kinase activity IEP Predicted GO
CC GO:0005789 endoplasmic reticulum membrane IEP Predicted GO
BP GO:0006099 tricarboxylic acid cycle IEP Predicted GO
BP GO:0006101 citrate metabolic process IEP Predicted GO
BP GO:0006487 protein N-linked glycosylation IEP Predicted GO
BP GO:0007165 signal transduction IEP Predicted GO
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Predicted GO
BP GO:0015977 carbon fixation IEP Predicted GO
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Predicted GO
BP GO:0016999 antibiotic metabolic process IEP Predicted GO
BP GO:0018196 peptidyl-asparagine modification IEP Predicted GO
BP GO:0018279 protein N-linked glycosylation via asparagine IEP Predicted GO
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Predicted GO
CC GO:0044432 endoplasmic reticulum part IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0072350 tricarboxylic acid metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR016073 Skp1_comp_POZ 6 64
IPR016072 Skp1_comp_dimer 104 151
No external refs found!