1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00030151-RA

PSME_00030151-RA


Description : (at1g15950 : 342.0) Encodes a cinnamoyl CoA reductase. Involved in lignin biosynthesis.; cinnamoyl coa reductase 1 (CCR1); CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: cinnamoyl coa reductase (TAIR:AT1G80820.1); Has 11995 Blast hits to 11983 proteins in 1896 species: Archae - 218; Bacteria - 5371; Metazoa - 416; Fungi - 931; Plants - 2539; Viruses - 54; Other Eukaryotes - 2466 (source: NCBI BLink). & (p51110|dfra_vitvi : 176.0) Dihydroflavonol-4-reductase (EC 1.1.1.219) (DFR) (Dihydrokaempferol 4-reductase) - Vitis vinifera (Grape) & (reliability: 684.0) & (original description: no original description)


Gene families : OG_42_0000056 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000056_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00030151-RA
Cluster HCCA clusters: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
AC234526.1_FG005 No alias NAD(P)-binding Rossmann-fold superfamily protein 0.02 Orthogroups_2024-Update
At1g09500 No alias At1g09500/F14J9_16 [Source:UniProtKB/TrEMBL;Acc:O80533] 0.02 Orthogroups_2024-Update
At1g15950 No alias Cinnamoyl-CoA reductase 1... 0.02 Orthogroups_2024-Update
At1g76470 No alias NAD(P)-binding Rossmann-fold superfamily protein... 0.03 Orthogroups_2024-Update
Bradi2g11337 No alias NAD(P)-binding Rossmann-fold superfamily protein 0.02 Orthogroups_2024-Update
Brara.D02044.1 No alias phaseic acid reductase *(CRL1/2) 0.03 Orthogroups_2024-Update
GRMZM2G057328 No alias cinnamoyl coa reductase 1 0.03 Orthogroups_2024-Update
GRMZM2G108570 No alias NAD(P)-binding Rossmann-fold superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G468439 No alias NAD(P)-binding Rossmann-fold superfamily protein 0.04 Orthogroups_2024-Update
Glyma.08G320900 No alias NAD(P)-binding Rossmann-fold superfamily protein 0.03 Orthogroups_2024-Update
Glyma.12G019800 No alias NAD(P)-binding Rossmann-fold superfamily protein 0.02 Orthogroups_2024-Update
Glyma.12G019900 No alias NAD(P)-binding Rossmann-fold superfamily protein 0.03 Orthogroups_2024-Update
Glyma.18G091300 No alias NAD(P)-binding Rossmann-fold superfamily protein 0.02 Orthogroups_2024-Update
HORVU5Hr1G050940.1 No alias cinnamoyl-CoA reductase *(CCR) 0.03 Orthogroups_2024-Update
HORVU5Hr1G073770.1 No alias phaseic acid reductase *(CRL1/2) 0.03 Orthogroups_2024-Update
HORVU5Hr1G073800.2 No alias phaseic acid reductase *(CRL1/2) 0.02 Orthogroups_2024-Update
LOC_Os01g44260 No alias dihydroflavonol-4-reductase, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os06g41840 No alias reductase, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os08g40440 No alias dihydroflavonol-4-reductase, putative, expressed 0.02 Orthogroups_2024-Update
MA_29397g0010 No alias (at1g15950 : 219.0) Encodes a cinnamoyl CoA reductase.... 0.03 Orthogroups_2024-Update
MA_647658g0010 No alias (p51110|dfra_vitvi : 461.0) Dihydroflavonol-4-reductase... 0.03 Orthogroups_2024-Update
Mp4g03990.1 No alias Cinnamoyl-CoA reductase 1 OS=Arabidopsis thaliana... 0.02 Orthogroups_2024-Update
PSME_00028440-RA No alias (at1g15950 : 421.0) Encodes a cinnamoyl CoA reductase.... 0.05 Orthogroups_2024-Update
PSME_00044637-RA No alias (p51110|dfra_vitvi : 322.0) Dihydroflavonol-4-reductase... 0.05 Orthogroups_2024-Update
Potri.001G256400 No alias NAD(P)-binding Rossmann-fold superfamily protein 0.04 Orthogroups_2024-Update
Potri.009G057700 No alias NAD(P)-binding Rossmann-fold superfamily protein 0.03 Orthogroups_2024-Update
Seita.1G361000.1 No alias cinnamoyl-CoA reductase *(CCR) 0.02 Orthogroups_2024-Update
Seita.2G147600.1 No alias cinnamoyl-CoA reductase *(CCR) 0.02 Orthogroups_2024-Update
Seita.4G048300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.6G163400.1 No alias cinnamoyl-CoA reductase *(CCR) 0.03 Orthogroups_2024-Update
Sobic.004G130800.2 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.007G206000.1 No alias tetraketide alpha-pyrone reductase *(TKPR) 0.02 Orthogroups_2024-Update
evm.model.contig_2031.3 No alias (at1g09510 : 132.0) similar to Eucalyptus gunnii alcohol... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA InterProScan predictions
MF GO:0050662 coenzyme binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity IEP Predicted GO
MF GO:0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity IEP Predicted GO
MF GO:0004602 glutathione peroxidase activity IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
MF GO:0008172 S-methyltransferase activity IEP Predicted GO
BP GO:0008652 cellular amino acid biosynthetic process IEP Predicted GO
BP GO:0015936 coenzyme A metabolic process IEP Predicted GO
MF GO:0042085 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001509 Epimerase_deHydtase 94 331
No external refs found!