1. Home
  2. Species
  3. Solanum pennellii
  4. Sequence
  5. Sopen06g002620

Sopen06g002620


Description : PPR repeat family


Gene families : OG_42_0000374 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000374_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen06g002620
Cluster HCCA clusters: Cluster_272

Target Alias Description ECC score Gene Family Method Actions
At1g62720 No alias Pentatricopeptide repeat-containing protein At1g62720... 0.03 Orthogroups_2024-Update
At5g16640 No alias Pentatricopeptide repeat-containing protein At5g16640,... 0.02 Orthogroups_2024-Update
Brara.I04995.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Glyma.01G059900 No alias ATP binding;nucleic acid binding;helicases 0.02 Orthogroups_2024-Update
Glyma.16G162100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Solyc06g007280 No alias Pentatricopeptide repeat protein (AHRD V3.3 *-* A0A1B3IPW0_CAPAN) 0.03 Orthogroups_2024-Update
Sopen06g002220 No alias PPR repeat family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 461 487
IPR002885 Pentatricopeptide_repeat 568 598
IPR002885 Pentatricopeptide_repeat 432 456
IPR002885 Pentatricopeptide_repeat 295 333
IPR002885 Pentatricopeptide_repeat 145 194
IPR002885 Pentatricopeptide_repeat 495 543
IPR002885 Pentatricopeptide_repeat 215 264
IPR002885 Pentatricopeptide_repeat 356 402
No external refs found!