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PSME_00030209-RA


Description : (at2g46600 : 129.0) Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: pinoid-binding protein 1 (TAIR:AT5G54490.1); Has 2760 Blast hits to 2760 proteins in 443 species: Archae - 0; Bacteria - 4; Metazoa - 1146; Fungi - 226; Plants - 931; Viruses - 0; Other Eukaryotes - 453 (source: NCBI BLink). & (reliability: 258.0) & (original description: no original description)


Gene families : OG_42_0000762 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000762_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00030209-RA
Cluster HCCA clusters: Cluster_32

Target Alias Description ECC score Gene Family Method Actions
A4A49_18148 No alias calcium-binding protein pbp1 0.03 Orthogroups_2024-Update
A4A49_60364 No alias calcium-binding protein pbp1 0.03 Orthogroups_2024-Update
Glyma.12G103600 No alias Calcium-binding EF-hand family protein 0.03 Orthogroups_2024-Update
MA_10168324g0010 No alias (at2g46600 : 116.0) Calcium-binding EF-hand family... 0.06 Orthogroups_2024-Update
MA_10375806g0010 No alias (at2g46600 : 129.0) Calcium-binding EF-hand family... 0.03 Orthogroups_2024-Update
MA_1552801g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
MA_48747g0010 No alias (at2g46600 : 135.0) Calcium-binding EF-hand family... 0.03 Orthogroups_2024-Update
MA_7489059g0010 No alias (at2g46600 : 98.6) Calcium-binding EF-hand family... 0.05 Orthogroups_2024-Update
MA_8089574g0010 No alias (at2g46600 : 98.6) Calcium-binding EF-hand family... 0.04 Orthogroups_2024-Update
Potri.001G411800 No alias Calcium-binding EF-hand family protein 0.02 Orthogroups_2024-Update
Potri.011G125300 No alias Calcium-binding EF-hand family protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0005375 copper ion transmembrane transporter activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005576 extracellular region IEP Predicted GO
CC GO:0005618 cell wall IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0005976 polysaccharide metabolic process IEP Predicted GO
BP GO:0006073 cellular glucan metabolic process IEP Predicted GO
BP GO:0006825 copper ion transport IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
BP GO:0035434 copper ion transmembrane transport IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0044042 glucan metabolic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044262 cellular carbohydrate metabolic process IEP Predicted GO
BP GO:0044264 cellular polysaccharide metabolic process IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
MF GO:0046527 glucosyltransferase activity IEP Predicted GO
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002048 EF_hand_dom 37 85
No external refs found!