1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00030260-RA

PSME_00030260-RA


Description : no hits & (original description: no original description)


Gene families : OG_42_0000100 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000100_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00030260-RA

Target Alias Description ECC score Gene Family Method Actions
A4A49_13923 No alias hypothetical protein 0.02 Orthogroups_2024-Update
At1g22160 No alias Senescence-associated family protein (DUF581)... 0.04 Orthogroups_2024-Update
Mp1g28240.1 No alias SnRK1-interacting factor (FLZ) 0.02 Orthogroups_2024-Update
PSME_00001414-RA No alias no hits & (original description: no original description) 0.07 Orthogroups_2024-Update
PSME_00025952-RA No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
PSME_00048104-RA No alias no hits & (original description: no original description) 0.06 Orthogroups_2024-Update
PSME_00054581-RA No alias (at5g11460 : 94.7) Protein of unknown function (DUF581);... 0.06 Orthogroups_2024-Update
PSME_00055210-RA No alias no hits & (original description: no original description) 0.05 Orthogroups_2024-Update
Sobic.006G193700.1 No alias regulatory protein *(FLZ) of SnRK1 complex 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Predicted GO
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0017025 TBP-class protein binding IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR007650 Zf-FLZ_dom 85 111
No external refs found!