1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00030306-RA

PSME_00030306-RA


Description : (at1g49540 : 537.0) elongator protein 2 (ELP2); FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G11160.1). & (reliability: 1074.0) & (original description: no original description)


Gene families : OG_42_0006904 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006904_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00030306-RA
Cluster HCCA clusters: Cluster_62


Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
BP GO:0006887 exocytosis IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
MF GO:0017056 structural constituent of nuclear pore IEP Predicted GO
BP GO:0032940 secretion by cell IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044448 cell cortex part IEP Predicted GO
BP GO:0046903 secretion IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
CC GO:0099023 tethering complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 168 213
IPR001680 WD40_repeat 272 309
IPR001680 WD40_repeat 82 122
No external refs found!