Description : (at3g54420 : 248.0) encodes an EP3 chitinase that is expressed during somatic embryogenesis in 'nursing' cells surrounding the embryos but not in embryos themselves. The gene is also expressed in mature pollen and growing pollen tubes until they enter the receptive synergid, but not in endosperm and integuments as in carrot. Post-embryonically, expression is found in hydathodes, stipules, root epidermis and emerging root hairs.; homolog of carrot EP3-3 chitinase (EP3); FUNCTIONS IN: chitinase activity; INVOLVED IN: somatic embryogenesis, plant-type hypersensitive response; LOCATED IN: cell wall; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Chitin-binding, type 1, conserved site (InterPro:IPR018371), Glycoside hydrolase, family 19 (InterPro:IPR016283), Chitin-binding, type 1 (InterPro:IPR001002), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: Chitinase family protein (TAIR:AT2G43590.1); Has 2660 Blast hits to 2432 proteins in 504 species: Archae - 0; Bacteria - 547; Metazoa - 34; Fungi - 178; Plants - 1776; Viruses - 22; Other Eukaryotes - 103 (source: NCBI BLink). & (q06209|chi4_brana : 242.0) Basic endochitinase CHB4 precursor (EC 3.2.1.14) - Brassica napus (Rape) & (reliability: 496.0) & (original description: no original description)
Gene families : OG_42_0000525 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000525_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00030535-RA | |
Cluster | HCCA clusters: Cluster_125 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
426710 | No alias | Chitinase family protein | 0.02 | Orthogroups_2024-Update | |
A4A49_35699 | No alias | endochitinase ep3 | 0.04 | Orthogroups_2024-Update | |
At3g54420 | No alias | EP3 [Source:UniProtKB/TrEMBL;Acc:A0A178VE44] | 0.03 | Orthogroups_2024-Update | |
Bradi5g14430 | No alias | homolog of carrot EP3-3 chitinase | 0.03 | Orthogroups_2024-Update | |
Brara.C01775.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Brara.E00903.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
GRMZM2G129189 | No alias | homolog of carrot EP3-3 chitinase | 0.02 | Orthogroups_2024-Update | |
Glyma.13G346700 | No alias | homolog of carrot EP3-3 chitinase | 0.05 | Orthogroups_2024-Update | |
MA_10099693g0010 | No alias | (at3g54420 : 181.0) encodes an EP3 chitinase that is... | 0.04 | Orthogroups_2024-Update | |
MA_10430424g0010 | No alias | (p29022|chia_maize : 207.0) Endochitinase A precursor... | 0.04 | Orthogroups_2024-Update | |
MA_10431378g0010 | No alias | (at3g54420 : 211.0) encodes an EP3 chitinase that is... | 0.04 | Orthogroups_2024-Update | |
MA_10435326g0010 | No alias | (at3g54420 : 247.0) encodes an EP3 chitinase that is... | 0.04 | Orthogroups_2024-Update | |
MA_114934g0010 | No alias | (at3g54420 : 218.0) encodes an EP3 chitinase that is... | 0.03 | Orthogroups_2024-Update | |
MA_36141g0010 | No alias | (at3g54420 : 245.0) encodes an EP3 chitinase that is... | 0.03 | Orthogroups_2024-Update | |
MA_7544918g0010 | No alias | (p29022|chia_maize : 152.0) Endochitinase A precursor... | 0.04 | Orthogroups_2024-Update | |
PSME_00018393-RA | No alias | (at3g54420 : 241.0) encodes an EP3 chitinase that is... | 0.05 | Orthogroups_2024-Update | |
PSME_00019563-RA | No alias | (at3g54420 : 211.0) encodes an EP3 chitinase that is... | 0.06 | Orthogroups_2024-Update | |
PSME_00029190-RA | No alias | (p29022|chia_maize : 256.0) Endochitinase A precursor... | 0.07 | Orthogroups_2024-Update | |
PSME_00029419-RA | No alias | (at3g54420 : 244.0) encodes an EP3 chitinase that is... | 0.05 | Orthogroups_2024-Update | |
PSME_00030955-RA | No alias | (at3g54420 : 243.0) encodes an EP3 chitinase that is... | 0.05 | Orthogroups_2024-Update | |
PSME_00037516-RA | No alias | (at3g54420 : 211.0) encodes an EP3 chitinase that is... | 0.06 | Orthogroups_2024-Update | |
PSME_00037636-RA | No alias | (p29022|chia_maize : 228.0) Endochitinase A precursor... | 0.08 | Orthogroups_2024-Update | |
PSME_00039570-RA | No alias | (p29023|chib_maize : 253.0) Endochitinase B precursor... | 0.05 | Orthogroups_2024-Update | |
PSME_00041154-RA | No alias | (at3g54420 : 236.0) encodes an EP3 chitinase that is... | 0.05 | Orthogroups_2024-Update | |
PSME_00050706-RA | No alias | (p29022|chia_maize : 237.0) Endochitinase A precursor... | 0.06 | Orthogroups_2024-Update | |
PSME_00050767-RA | No alias | (p29022|chia_maize : 240.0) Endochitinase A precursor... | 0.08 | Orthogroups_2024-Update | |
PSME_00051432-RA | No alias | (at3g54420 : 213.0) encodes an EP3 chitinase that is... | 0.06 | Orthogroups_2024-Update | |
PSME_00052222-RA | No alias | (at3g54420 : 236.0) encodes an EP3 chitinase that is... | 0.1 | Orthogroups_2024-Update | |
Pp1s184_140V6 | No alias | class iv chitinase | 0.04 | Orthogroups_2024-Update | |
Pp1s197_8V6 | No alias | chitinase | 0.02 | Orthogroups_2024-Update | |
Seita.7G150600.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.7G150700.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Sobic.006G132500.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
Sobic.006G132700.1 | No alias | Unknown function | 0.05 | Orthogroups_2024-Update | |
Sopen04g027980 | No alias | Chitinase class I | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004568 | chitinase activity | IEA | InterProScan predictions |
BP | GO:0006032 | chitin catabolic process | IEA | InterProScan predictions |
BP | GO:0016998 | cell wall macromolecule catabolic process | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000287 | magnesium ion binding | IEP | Predicted GO |
MF | GO:0004601 | peroxidase activity | IEP | Predicted GO |
MF | GO:0004602 | glutathione peroxidase activity | IEP | Predicted GO |
MF | GO:0005507 | copper ion binding | IEP | Predicted GO |
BP | GO:0006811 | ion transport | IEP | Predicted GO |
BP | GO:0006812 | cation transport | IEP | Predicted GO |
BP | GO:0006813 | potassium ion transport | IEP | Predicted GO |
BP | GO:0006820 | anion transport | IEP | Predicted GO |
BP | GO:0006835 | dicarboxylic acid transport | IEP | Predicted GO |
BP | GO:0006950 | response to stress | IEP | Predicted GO |
BP | GO:0006979 | response to oxidative stress | IEP | Predicted GO |
MF | GO:0008131 | primary amine oxidase activity | IEP | Predicted GO |
MF | GO:0008324 | cation transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0010333 | terpene synthase activity | IEP | Predicted GO |
MF | GO:0015075 | ion transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0015077 | monovalent inorganic cation transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0015079 | potassium ion transmembrane transporter activity | IEP | Predicted GO |
BP | GO:0015672 | monovalent inorganic cation transport | IEP | Predicted GO |
BP | GO:0015711 | organic anion transport | IEP | Predicted GO |
BP | GO:0015740 | C4-dicarboxylate transport | IEP | Predicted GO |
BP | GO:0015743 | malate transport | IEP | Predicted GO |
BP | GO:0015849 | organic acid transport | IEP | Predicted GO |
MF | GO:0016209 | antioxidant activity | IEP | Predicted GO |
MF | GO:0016491 | oxidoreductase activity | IEP | Predicted GO |
MF | GO:0016638 | oxidoreductase activity, acting on the CH-NH2 group of donors | IEP | Predicted GO |
MF | GO:0016641 | oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor | IEP | Predicted GO |
MF | GO:0016684 | oxidoreductase activity, acting on peroxide as acceptor | IEP | Predicted GO |
MF | GO:0016829 | lyase activity | IEP | Predicted GO |
MF | GO:0016835 | carbon-oxygen lyase activity | IEP | Predicted GO |
MF | GO:0016838 | carbon-oxygen lyase activity, acting on phosphates | IEP | Predicted GO |
BP | GO:0034220 | ion transmembrane transport | IEP | Predicted GO |
MF | GO:0046873 | metal ion transmembrane transporter activity | IEP | Predicted GO |
BP | GO:0046942 | carboxylic acid transport | IEP | Predicted GO |
MF | GO:0048038 | quinone binding | IEP | Predicted GO |
BP | GO:0050896 | response to stimulus | IEP | Predicted GO |
BP | GO:0055114 | oxidation-reduction process | IEP | Predicted GO |
BP | GO:0071805 | potassium ion transmembrane transport | IEP | Predicted GO |
BP | GO:0098655 | cation transmembrane transport | IEP | Predicted GO |
BP | GO:0098660 | inorganic ion transmembrane transport | IEP | Predicted GO |
BP | GO:0098662 | inorganic cation transmembrane transport | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR000726 | Glyco_hydro_19_cat | 25 | 224 |
No external refs found! |