PSME_00030535-RA

Description : (at3g54420 : 248.0) encodes an EP3 chitinase that is expressed during somatic embryogenesis in 'nursing' cells surrounding the embryos but not in embryos themselves. The gene is also expressed in mature pollen and growing pollen tubes until they enter the receptive synergid, but not in endosperm and integuments as in carrot. Post-embryonically, expression is found in hydathodes, stipules, root epidermis and emerging root hairs.; homolog of carrot EP3-3 chitinase (EP3); FUNCTIONS IN: chitinase activity; INVOLVED IN: somatic embryogenesis, plant-type hypersensitive response; LOCATED IN: cell wall; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Chitin-binding, type 1, conserved site (InterPro:IPR018371), Glycoside hydrolase, family 19 (InterPro:IPR016283), Chitin-binding, type 1 (InterPro:IPR001002), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: Chitinase family protein (TAIR:AT2G43590.1); Has 2660 Blast hits to 2432 proteins in 504 species: Archae - 0; Bacteria - 547; Metazoa - 34; Fungi - 178; Plants - 1776; Viruses - 22; Other Eukaryotes - 103 (source: NCBI BLink). & (q06209|chi4_brana : 242.0) Basic endochitinase CHB4 precursor (EC 3.2.1.14) - Brassica napus (Rape) & (reliability: 496.0) & (original description: no original description)

Gene families : OG_42_0000525 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000525_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00030535-RA
Cluster	HCCA clusters: Cluster_125

Target	Alias	Description	ECC score	Gene Family Method
426710	No alias	Chitinase family protein	0.02	Orthogroups_2024-Update
A4A49_35699	No alias	endochitinase ep3	0.04	Orthogroups_2024-Update
At3g54420	No alias	EP3 [Source:UniProtKB/TrEMBL;Acc:A0A178VE44]	0.03	Orthogroups_2024-Update
Bradi5g14430	No alias	homolog of carrot EP3-3 chitinase	0.03	Orthogroups_2024-Update
Brara.C01775.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Brara.E00903.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
GRMZM2G129189	No alias	homolog of carrot EP3-3 chitinase	0.02	Orthogroups_2024-Update
Glyma.13G346700	No alias	homolog of carrot EP3-3 chitinase	0.05	Orthogroups_2024-Update
MA_10099693g0010	No alias	(at3g54420 : 181.0) encodes an EP3 chitinase that is...	0.04	Orthogroups_2024-Update
MA_10430424g0010	No alias	(p29022\|chia_maize : 207.0) Endochitinase A precursor...	0.04	Orthogroups_2024-Update
MA_10431378g0010	No alias	(at3g54420 : 211.0) encodes an EP3 chitinase that is...	0.04	Orthogroups_2024-Update
MA_10435326g0010	No alias	(at3g54420 : 247.0) encodes an EP3 chitinase that is...	0.04	Orthogroups_2024-Update
MA_114934g0010	No alias	(at3g54420 : 218.0) encodes an EP3 chitinase that is...	0.03	Orthogroups_2024-Update
MA_36141g0010	No alias	(at3g54420 : 245.0) encodes an EP3 chitinase that is...	0.03	Orthogroups_2024-Update
MA_7544918g0010	No alias	(p29022\|chia_maize : 152.0) Endochitinase A precursor...	0.04	Orthogroups_2024-Update
PSME_00018393-RA	No alias	(at3g54420 : 241.0) encodes an EP3 chitinase that is...	0.05	Orthogroups_2024-Update
PSME_00019563-RA	No alias	(at3g54420 : 211.0) encodes an EP3 chitinase that is...	0.06	Orthogroups_2024-Update
PSME_00029190-RA	No alias	(p29022\|chia_maize : 256.0) Endochitinase A precursor...	0.07	Orthogroups_2024-Update
PSME_00029419-RA	No alias	(at3g54420 : 244.0) encodes an EP3 chitinase that is...	0.05	Orthogroups_2024-Update
PSME_00030955-RA	No alias	(at3g54420 : 243.0) encodes an EP3 chitinase that is...	0.05	Orthogroups_2024-Update
PSME_00037516-RA	No alias	(at3g54420 : 211.0) encodes an EP3 chitinase that is...	0.06	Orthogroups_2024-Update
PSME_00037636-RA	No alias	(p29022\|chia_maize : 228.0) Endochitinase A precursor...	0.08	Orthogroups_2024-Update
PSME_00039570-RA	No alias	(p29023\|chib_maize : 253.0) Endochitinase B precursor...	0.05	Orthogroups_2024-Update
PSME_00041154-RA	No alias	(at3g54420 : 236.0) encodes an EP3 chitinase that is...	0.05	Orthogroups_2024-Update
PSME_00050706-RA	No alias	(p29022\|chia_maize : 237.0) Endochitinase A precursor...	0.06	Orthogroups_2024-Update
PSME_00050767-RA	No alias	(p29022\|chia_maize : 240.0) Endochitinase A precursor...	0.08	Orthogroups_2024-Update
PSME_00051432-RA	No alias	(at3g54420 : 213.0) encodes an EP3 chitinase that is...	0.06	Orthogroups_2024-Update
PSME_00052222-RA	No alias	(at3g54420 : 236.0) encodes an EP3 chitinase that is...	0.1	Orthogroups_2024-Update
Pp1s184_140V6	No alias	class iv chitinase	0.04	Orthogroups_2024-Update
Pp1s197_8V6	No alias	chitinase	0.02	Orthogroups_2024-Update
Seita.7G150600.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Seita.7G150700.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Sobic.006G132500.1	No alias	Unknown function	0.04	Orthogroups_2024-Update
Sobic.006G132700.1	No alias	Unknown function	0.05	Orthogroups_2024-Update
Sopen04g027980	No alias	Chitinase class I	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004568	chitinase activity	IEA	InterProScan predictions
BP	GO:0006022	aminoglycan metabolic process	None	Extended
BP	GO:0006026	aminoglycan catabolic process	None	Extended
BP	GO:0006030	chitin metabolic process	None	Extended
BP	GO:0006032	chitin catabolic process	IEA	InterProScan predictions
BP	GO:0006040	amino sugar metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0016998	cell wall macromolecule catabolic process	IEA	InterProScan predictions
BP	GO:0017144	drug metabolic process	None	Extended
BP	GO:0042737	drug catabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044036	cell wall macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046348	amino sugar catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901071	glucosamine-containing compound metabolic process	None	Extended
BP	GO:1901072	glucosamine-containing compound catabolic process	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901136	carbohydrate derivative catabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000287	magnesium ion binding	IEP	Predicted GO
MF	GO:0004601	peroxidase activity	IEP	Predicted GO
MF	GO:0004602	glutathione peroxidase activity	IEP	Predicted GO
MF	GO:0005507	copper ion binding	IEP	Predicted GO
BP	GO:0006811	ion transport	IEP	Predicted GO
BP	GO:0006812	cation transport	IEP	Predicted GO
BP	GO:0006813	potassium ion transport	IEP	Predicted GO
BP	GO:0006820	anion transport	IEP	Predicted GO
BP	GO:0006835	dicarboxylic acid transport	IEP	Predicted GO
BP	GO:0006950	response to stress	IEP	Predicted GO
BP	GO:0006979	response to oxidative stress	IEP	Predicted GO
MF	GO:0008131	primary amine oxidase activity	IEP	Predicted GO
MF	GO:0008324	cation transmembrane transporter activity	IEP	Predicted GO
MF	GO:0010333	terpene synthase activity	IEP	Predicted GO
MF	GO:0015075	ion transmembrane transporter activity	IEP	Predicted GO
MF	GO:0015077	monovalent inorganic cation transmembrane transporter activity	IEP	Predicted GO
MF	GO:0015079	potassium ion transmembrane transporter activity	IEP	Predicted GO
BP	GO:0015672	monovalent inorganic cation transport	IEP	Predicted GO
BP	GO:0015711	organic anion transport	IEP	Predicted GO
BP	GO:0015740	C4-dicarboxylate transport	IEP	Predicted GO
BP	GO:0015743	malate transport	IEP	Predicted GO
BP	GO:0015849	organic acid transport	IEP	Predicted GO
MF	GO:0016209	antioxidant activity	IEP	Predicted GO
MF	GO:0016491	oxidoreductase activity	IEP	Predicted GO
MF	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors	IEP	Predicted GO
MF	GO:0016641	oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	IEP	Predicted GO
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	Predicted GO
MF	GO:0016829	lyase activity	IEP	Predicted GO
MF	GO:0016835	carbon-oxygen lyase activity	IEP	Predicted GO
MF	GO:0016838	carbon-oxygen lyase activity, acting on phosphates	IEP	Predicted GO
BP	GO:0034220	ion transmembrane transport	IEP	Predicted GO
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	Predicted GO
BP	GO:0046942	carboxylic acid transport	IEP	Predicted GO
MF	GO:0048038	quinone binding	IEP	Predicted GO
BP	GO:0050896	response to stimulus	IEP	Predicted GO
BP	GO:0055114	oxidation-reduction process	IEP	Predicted GO
BP	GO:0071805	potassium ion transmembrane transport	IEP	Predicted GO
BP	GO:0098655	cation transmembrane transport	IEP	Predicted GO
BP	GO:0098660	inorganic ion transmembrane transport	IEP	Predicted GO
BP	GO:0098662	inorganic cation transmembrane transport	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000726	Glyco_hydro_19_cat	25	224

External Links

No external refs found!

PSME_00030535-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation