PSME_00030616-RA

Description : (at5g23690 : 95.9) Polynucleotide adenylyltransferase family protein; FUNCTIONS IN: RNA binding, nucleotidyltransferase activity; INVOLVED IN: RNA processing; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Poly A polymerase, head domain (InterPro:IPR002646); BEST Arabidopsis thaliana protein match is: polynucleotide adenylyltransferase family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT3G48830.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 191.8) & (original description: no original description)

Gene families : OG_42_0002409 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002409_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00030616-RA

Target	Alias	Description	ECC score	Gene Family Method
At1g28090	No alias	Polynucleotide adenylyltransferase family protein...	0.01	Orthogroups_2024-Update
At2g17580	No alias	Polynucleotide adenylyltransferase family protein...	0.03	Orthogroups_2024-Update
At5g23690	No alias	Polynucleotide adenylyltransferase family protein...	0.01	Orthogroups_2024-Update
Brara.F02540.1	No alias	Unknown function	0.01	Orthogroups_2024-Update
Brara.F02603.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Brara.I02975.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Glyma.01G159600	No alias	Polynucleotide adenylyltransferase family protein	0.02	Orthogroups_2024-Update
Glyma.05G201500	No alias	Polynucleotide adenylyltransferase family protein	0.01	Orthogroups_2024-Update
Glyma.08G009000	No alias	Polynucleotide adenylyltransferase family protein	0.02	Orthogroups_2024-Update
Glyma.11G084602	No alias	Polynucleotide adenylyltransferase family protein	0.02	Orthogroups_2024-Update
Potri.003G164400	No alias	Polynucleotide adenylyltransferase family protein	0.01	Orthogroups_2024-Update
Potri.005G100100	No alias	Polynucleotide adenylyltransferase family protein	0.01	Orthogroups_2024-Update
Potri.012G105000	No alias	Polynucleotide adenylyltransferase family protein	0.01	Orthogroups_2024-Update
Seita.7G078500.1	No alias	Unknown function	0.01	Orthogroups_2024-Update
Seita.9G552600.1	No alias	Unknown function	0.01	Orthogroups_2024-Update
Sobic.001G517200.2	No alias	Unknown function	0.03	Orthogroups_2024-Update
Solyc01g009670	No alias	Poly(A) polymerase, putative (AHRD V3.3 *** B9RA84_RICCO)	0.01	Orthogroups_2024-Update
Solyc03g032180	No alias	Poly(A) polymerase, putative (AHRD V3.3 *** B9S6T6_RICCO)	0.01	Orthogroups_2024-Update
Solyc03g097830	No alias	Poly (A) polymerase (AHRD V3.3 *** A0A0B0NTQ5_GOSAR)	0.01	Orthogroups_2024-Update
Sopen01g005190	No alias	Poly A polymerase head domain	0.01	Orthogroups_2024-Update
Sopen03g028570	No alias	Poly A polymerase head domain	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	InterProScan predictions
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	InterProScan predictions
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	IEA	InterProScan predictions
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0019842	vitamin binding	IEP	Predicted GO
MF	GO:0030170	pyridoxal phosphate binding	IEP	Predicted GO
MF	GO:0070279	vitamin B6 binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002646	PolA_pol_head_dom	8	48
IPR032828	PolyA_RNA-bd	66	124

External Links

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PSME_00030616-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation