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  5. PSME_00030795-RA

PSME_00030795-RA


Description : (at3g57430 : 633.0) Encodes a chloroplast RNA editing factor.; ORGANELLE TRANSCRIPT PROCESSING 84 (OTP84); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G11290.1); Has 46517 Blast hits to 13331 proteins in 240 species: Archae - 0; Bacteria - 7; Metazoa - 55; Fungi - 91; Plants - 45789; Viruses - 0; Other Eukaryotes - 575 (source: NCBI BLink). & (q76c99|rf1_orysa : 194.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1158.0) & (original description: no original description)


Gene families : OG_42_0022368 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00030795-RA
Cluster HCCA clusters: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
MA_4430g0010 No alias (at1g20230 : 589.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004347 glucose-6-phosphate isomerase activity IEP Predicted GO
BP GO:0006094 gluconeogenesis IEP Predicted GO
MF GO:0015035 protein disulfide oxidoreductase activity IEP Predicted GO
MF GO:0015036 disulfide oxidoreductase activity IEP Predicted GO
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Predicted GO
BP GO:0019319 hexose biosynthetic process IEP Predicted GO
BP GO:0030001 metal ion transport IEP Predicted GO
BP GO:0046364 monosaccharide biosynthetic process IEP Predicted GO
MF GO:0046873 metal ion transmembrane transporter activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 415 462
IPR002885 Pentatricopeptide_repeat 259 306
IPR002885 Pentatricopeptide_repeat 551 599
IPR002885 Pentatricopeptide_repeat 652 700
IPR002885 Pentatricopeptide_repeat 87 135
IPR002885 Pentatricopeptide_repeat 191 217
IPR002885 Pentatricopeptide_repeat 383 411
IPR002885 Pentatricopeptide_repeat 519 548
IPR002885 Pentatricopeptide_repeat 163 189
IPR002885 Pentatricopeptide_repeat 68 86
IPR002885 Pentatricopeptide_repeat 491 514
IPR002885 Pentatricopeptide_repeat 355 381
IPR002885 Pentatricopeptide_repeat 226 256
IPR002885 Pentatricopeptide_repeat 610 649
IPR032867 DYW_dom 826 950
No external refs found!