PSME_00030955-RA

Description : (at3g54420 : 243.0) encodes an EP3 chitinase that is expressed during somatic embryogenesis in 'nursing' cells surrounding the embryos but not in embryos themselves. The gene is also expressed in mature pollen and growing pollen tubes until they enter the receptive synergid, but not in endosperm and integuments as in carrot. Post-embryonically, expression is found in hydathodes, stipules, root epidermis and emerging root hairs.; homolog of carrot EP3-3 chitinase (EP3); FUNCTIONS IN: chitinase activity; INVOLVED IN: somatic embryogenesis, plant-type hypersensitive response; LOCATED IN: cell wall; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Chitin-binding, type 1, conserved site (InterPro:IPR018371), Glycoside hydrolase, family 19 (InterPro:IPR016283), Chitin-binding, type 1 (InterPro:IPR001002), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: Chitinase family protein (TAIR:AT2G43590.1); Has 2660 Blast hits to 2432 proteins in 504 species: Archae - 0; Bacteria - 547; Metazoa - 34; Fungi - 178; Plants - 1776; Viruses - 22; Other Eukaryotes - 103 (source: NCBI BLink). & (p29022|chia_maize : 241.0) Endochitinase A precursor (EC 3.2.1.14) (Seed chitinase A) - Zea mays (Maize) & (reliability: 486.0) & (original description: no original description)

Gene families : OG_42_0000525 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000525_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00030955-RA
Cluster	HCCA clusters: Cluster_40

Target	Alias	Description	ECC score	Gene Family Method
A4A49_35699	No alias	endochitinase ep3	0.03	Orthogroups_2024-Update
Bradi5g14430	No alias	homolog of carrot EP3-3 chitinase	0.03	Orthogroups_2024-Update
GRMZM2G051943	No alias	homolog of carrot EP3-3 chitinase	0.02	Orthogroups_2024-Update
Glyma.11G124500	No alias	homolog of carrot EP3-3 chitinase	0.03	Orthogroups_2024-Update
Glyma.13G346700	No alias	homolog of carrot EP3-3 chitinase	0.03	Orthogroups_2024-Update
LOC_Os02g39330	No alias	CHIT1 - Chitinase family protein precursor, expressed	0.02	Orthogroups_2024-Update
MA_10099693g0010	No alias	(at3g54420 : 181.0) encodes an EP3 chitinase that is...	0.02	Orthogroups_2024-Update
MA_102538g0010	No alias	(p29022\|chia_maize : 115.0) Endochitinase A precursor...	0.03	Orthogroups_2024-Update
MA_10427514g0010	No alias	(p29022\|chia_maize : 267.0) Endochitinase A precursor...	0.03	Orthogroups_2024-Update
MA_10430424g0010	No alias	(p29022\|chia_maize : 207.0) Endochitinase A precursor...	0.06	Orthogroups_2024-Update
MA_10431378g0010	No alias	(at3g54420 : 211.0) encodes an EP3 chitinase that is...	0.04	Orthogroups_2024-Update
MA_114934g0010	No alias	(at3g54420 : 218.0) encodes an EP3 chitinase that is...	0.03	Orthogroups_2024-Update
MA_295712g0010	No alias	(at3g54420 : 239.0) encodes an EP3 chitinase that is...	0.04	Orthogroups_2024-Update
MA_36141g0010	No alias	(at3g54420 : 245.0) encodes an EP3 chitinase that is...	0.04	Orthogroups_2024-Update
MA_5029466g0010	No alias	(at2g43590 : 86.3) Chitinase family protein; FUNCTIONS...	0.05	Orthogroups_2024-Update
MA_7544918g0010	No alias	(p29022\|chia_maize : 152.0) Endochitinase A precursor...	0.04	Orthogroups_2024-Update
PSME_00029187-RA	No alias	(p29022\|chia_maize : 308.0) Endochitinase A precursor...	0.05	Orthogroups_2024-Update
PSME_00030535-RA	No alias	(at3g54420 : 248.0) encodes an EP3 chitinase that is...	0.05	Orthogroups_2024-Update
PSME_00037516-RA	No alias	(at3g54420 : 211.0) encodes an EP3 chitinase that is...	0.09	Orthogroups_2024-Update
PSME_00039570-RA	No alias	(p29023\|chib_maize : 253.0) Endochitinase B precursor...	0.07	Orthogroups_2024-Update
PSME_00046775-RA	No alias	(at3g54420 : 171.0) encodes an EP3 chitinase that is...	0.04	Orthogroups_2024-Update
PSME_00047416-RA	No alias	(p29022\|chia_maize : 241.0) Endochitinase A precursor...	0.04	Orthogroups_2024-Update
PSME_00050586-RA	No alias	(p29022\|chia_maize : 243.0) Endochitinase A precursor...	0.02	Orthogroups_2024-Update
Potri.019G093800	No alias	homolog of carrot EP3-3 chitinase	0.02	Orthogroups_2024-Update
Pp1s197_8V6	No alias	chitinase	0.02	Orthogroups_2024-Update
Seita.7G150500.1	No alias	Unknown function	0.04	Orthogroups_2024-Update
Seita.7G150600.1	No alias	Unknown function	0.05	Orthogroups_2024-Update
Seita.7G150700.1	No alias	Unknown function	0.04	Orthogroups_2024-Update
Sobic.006G132400.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Sobic.006G132500.1	No alias	Unknown function	0.04	Orthogroups_2024-Update
Sobic.006G132700.1	No alias	Unknown function	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004568	chitinase activity	IEA	InterProScan predictions
BP	GO:0006022	aminoglycan metabolic process	None	Extended
BP	GO:0006026	aminoglycan catabolic process	None	Extended
BP	GO:0006030	chitin metabolic process	None	Extended
BP	GO:0006032	chitin catabolic process	IEA	InterProScan predictions
BP	GO:0006040	amino sugar metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0016998	cell wall macromolecule catabolic process	IEA	InterProScan predictions
BP	GO:0017144	drug metabolic process	None	Extended
BP	GO:0042737	drug catabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044036	cell wall macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046348	amino sugar catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901071	glucosamine-containing compound metabolic process	None	Extended
BP	GO:1901072	glucosamine-containing compound catabolic process	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901136	carbohydrate derivative catabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004175	endopeptidase activity	IEP	Predicted GO
MF	GO:0004252	serine-type endopeptidase activity	IEP	Predicted GO
MF	GO:0004421	hydroxymethylglutaryl-CoA synthase activity	IEP	Predicted GO
MF	GO:0004474	malate synthase activity	IEP	Predicted GO
MF	GO:0004556	alpha-amylase activity	IEP	Predicted GO
BP	GO:0005975	carbohydrate metabolic process	IEP	Predicted GO
BP	GO:0006081	cellular aldehyde metabolic process	IEP	Predicted GO
BP	GO:0006097	glyoxylate cycle	IEP	Predicted GO
BP	GO:0006468	protein phosphorylation	IEP	Predicted GO
BP	GO:0006629	lipid metabolic process	IEP	Predicted GO
BP	GO:0009605	response to external stimulus	IEP	Predicted GO
BP	GO:0009607	response to biotic stimulus	IEP	Predicted GO
BP	GO:0009617	response to bacterium	IEP	Predicted GO
BP	GO:0009620	response to fungus	IEP	Predicted GO
MF	GO:0016740	transferase activity	IEP	Predicted GO
MF	GO:0016746	transferase activity, transferring acyl groups	IEP	Predicted GO
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Predicted GO
MF	GO:0016868	intramolecular transferase activity, phosphotransferases	IEP	Predicted GO
BP	GO:0042742	defense response to bacterium	IEP	Predicted GO
BP	GO:0043207	response to external biotic stimulus	IEP	Predicted GO
BP	GO:0044238	primary metabolic process	IEP	Predicted GO
BP	GO:0046487	glyoxylate metabolic process	IEP	Predicted GO
MF	GO:0046912	transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer	IEP	Predicted GO
BP	GO:0050832	defense response to fungus	IEP	Predicted GO
BP	GO:0051704	multi-organism process	IEP	Predicted GO
BP	GO:0051707	response to other organism	IEP	Predicted GO
BP	GO:0098542	defense response to other organism	IEP	Predicted GO
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000726	Glyco_hydro_19_cat	61	260

External Links

No external refs found!

PSME_00030955-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation