1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00031025-RA

PSME_00031025-RA


Description : (at1g67900 : 560.0) Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT3G26490.1). & (q5ks50|nph3_orysa : 378.0) Coleoptile phototropism protein 1 (Non-phototropic hypocotyl 3-like protein) (NPH3-like protein) - Oryza sativa (Rice) & (reliability: 1120.0) & (original description: no original description)


Gene families : OG_42_0000067 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000067_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00031025-RA
Cluster HCCA clusters: Cluster_108

Target Alias Description ECC score Gene Family Method Actions
A4A49_15642 No alias btbpoz domain-containing protein 0.02 Orthogroups_2024-Update
A4A49_24985 No alias root phototropism protein 2 0.02 Orthogroups_2024-Update
Bradi3g14350 No alias Phototropic-responsive NPH3 family protein 0.04 Orthogroups_2024-Update
Bradi4g03397 No alias Phototropic-responsive NPH3 family protein 0.04 Orthogroups_2024-Update
Bradi4g44320 No alias Phototropic-responsive NPH3 family protein 0.03 Orthogroups_2024-Update
Brara.D01192.1 No alias substrate adaptor *(NRL) of CUL3-based E3 ubiquitin... 0.02 Orthogroups_2024-Update
Brara.E01281.1 No alias phototropin signalling factor *(RPT2) 0.04 Orthogroups_2024-Update
Glyma.13G320400 No alias Phototropic-responsive NPH3 family protein 0.03 Orthogroups_2024-Update
HORVU4Hr1G023260.4 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU5Hr1G093120.2 No alias substrate adaptor *(NRL) of CUL3-based E3 ubiquitin... 0.04 Orthogroups_2024-Update
MA_10074020g0010 No alias (at5g67385 : 590.0) Phototropic-responsive NPH3 family... 0.05 Orthogroups_2024-Update
MA_10431089g0010 No alias (at3g44820 : 615.0) Phototropic-responsive NPH3 family... 0.04 Orthogroups_2024-Update
MA_842546g0010 No alias (at5g48800 : 609.0) Phototropic-responsive NPH3 family... 0.03 Orthogroups_2024-Update
Potri.018G018600 No alias Phototropic-responsive NPH3 family protein 0.04 Orthogroups_2024-Update
Sobic.001G096900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc10g047530 No alias Phototropic-responsive NPH3 family protein (AHRD V3.3... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Predicted GO
BP GO:0000160 phosphorelay signal transduction system IEP Predicted GO
MF GO:0004057 arginyltransferase activity IEP Predicted GO
MF GO:0004673 protein histidine kinase activity IEP Predicted GO
MF GO:0004721 phosphoprotein phosphatase activity IEP Predicted GO
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0016311 dephosphorylation IEP Predicted GO
BP GO:0016598 protein arginylation IEP Predicted GO
MF GO:0016755 transferase activity, transferring amino-acyl groups IEP Predicted GO
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Predicted GO
MF GO:0016791 phosphatase activity IEP Predicted GO
BP GO:0035556 intracellular signal transduction IEP Predicted GO
MF GO:0042802 identical protein binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
InterPro domains Description Start Stop
IPR027356 NPH3_dom 177 459
No external refs found!