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  5. PSME_00031030-RA

PSME_00031030-RA


Description : (at5g14740 : 84.0) Encodes a beta carbonic anhydrase likely to be localized in the cytoplasm. Expression of its mRNA is seen in etiolated seedlings and points to a possible nonphotosynthetic role for this isoform.; carbonic anhydrase 2 (CA2); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: defense response to bacterium, carbon utilization; LOCATED IN: cytosol, chloroplast thylakoid membrane, apoplast, chloroplast, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, prokaryotic-like, conserved site (InterPro:IPR015892), Carbonic anhydrase (InterPro:IPR001765); BEST Arabidopsis thaliana protein match is: carbonic anhydrase 1 (TAIR:AT3G01500.2); Has 5023 Blast hits to 5008 proteins in 1512 species: Archae - 36; Bacteria - 3889; Metazoa - 60; Fungi - 203; Plants - 352; Viruses - 0; Other Eukaryotes - 483 (source: NCBI BLink). & (reliability: 168.0) & (original description: no original description)


Gene families : OG_42_0000693 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000693_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00031030-RA
Cluster HCCA clusters: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
A4A49_26898 No alias beta carbonic anhydrase 5, chloroplastic 0.01 Orthogroups_2024-Update
Brara.A02232.1 No alias beta-type carbonic anhydrase 0.01 Orthogroups_2024-Update
GRMZM2G094165 No alias beta carbonic anhydrase 4 0.02 Orthogroups_2024-Update
Glyma.15G057700 No alias beta carbonic anhydrase 5 0.01 Orthogroups_2024-Update
Glyma.18G138400 No alias carbonic anhydrase 2 0.03 Orthogroups_2024-Update
Seita.5G240100.1 No alias beta-type carbonic anhydrase 0.02 Orthogroups_2024-Update
Sobic.002G230100.5 No alias beta-type carbonic anhydrase 0.03 Orthogroups_2024-Update
Sobic.003G234200.6 No alias beta-type carbonic anhydrase 0.01 Orthogroups_2024-Update
Solyc02g086820 No alias chloroplast carbonic anhydrase 0.01 Orthogroups_2024-Update
Solyc05g005490 No alias carbonic anhydrase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004089 carbonate dehydratase activity IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0007165 signal transduction IEP Predicted GO
InterPro domains Description Start Stop
IPR001765 Carbonic_anhydrase 128 163
No external refs found!