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  5. PSME_00031239-RA

PSME_00031239-RA


Description : (at1g18140 : 634.0) putative laccase, a member of laccase family of genes (with 17 members in Arabidopsis).; laccase 1 (LAC1); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 17 (TAIR:AT5G60020.1); Has 10262 Blast hits to 8380 proteins in 1481 species: Archae - 46; Bacteria - 4149; Metazoa - 461; Fungi - 3664; Plants - 1564; Viruses - 0; Other Eukaryotes - 378 (source: NCBI BLink). & (p14133|aso_cucsa : 251.0) L-ascorbate oxidase precursor (EC 1.10.3.3) (Ascorbase) (ASO) - Cucumis sativus (Cucumber) & (reliability: 1268.0) & (original description: no original description)


Gene families : OG_42_0000051 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000051_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00031239-RA
Cluster HCCA clusters: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
A4A49_00457 No alias laccase-3 0.04 Orthogroups_2024-Update
A4A49_01901 No alias laccase-15 0.04 Orthogroups_2024-Update
A4A49_13107 No alias laccase-14 0.06 Orthogroups_2024-Update
A4A49_18512 No alias laccase-3 0.03 Orthogroups_2024-Update
A4A49_18568 No alias laccase-4 0.03 Orthogroups_2024-Update
A4A49_21564 No alias laccase-15 0.06 Orthogroups_2024-Update
At3g09220 No alias Laccase-7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SR40] 0.03 Orthogroups_2024-Update
At5g05390 No alias Laccase-12 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLB5] 0.03 Orthogroups_2024-Update
At5g09360 No alias Laccase-14 [Source:UniProtKB/Swiss-Prot;Acc:Q9FY79] 0.02 Orthogroups_2024-Update
Bradi1g66720 No alias laccase 17 0.03 Orthogroups_2024-Update
Bradi2g23350 No alias laccase 17 0.03 Orthogroups_2024-Update
Bradi2g54740 No alias laccase 2 0.02 Orthogroups_2024-Update
Brara.D02326.1 No alias lignin laccase & EC_1.10 oxidoreductase acting on... 0.04 Orthogroups_2024-Update
Brara.E01299.1 No alias EC_1.10 oxidoreductase acting on diphenol or related... 0.03 Orthogroups_2024-Update
Brara.H02436.1 No alias EC_1.10 oxidoreductase acting on diphenol or related... 0.03 Orthogroups_2024-Update
Brara.J02661.1 No alias EC_1.10 oxidoreductase acting on diphenol or related... 0.04 Orthogroups_2024-Update
GRMZM2G072808 No alias laccase 17 0.02 Orthogroups_2024-Update
GRMZM2G336337 No alias laccase 12 0.03 Orthogroups_2024-Update
GRMZM2G447271 No alias laccase 17 0.02 Orthogroups_2024-Update
GRMZM5G814718 No alias laccase 5 0.03 Orthogroups_2024-Update
Glyma.03G073778 No alias laccase 7 0.03 Orthogroups_2024-Update
Glyma.07G142600 No alias Laccase/Diphenol oxidase family protein 0.03 Orthogroups_2024-Update
Glyma.12G121700 No alias Laccase/Diphenol oxidase family protein 0.03 Orthogroups_2024-Update
Glyma.14G056100 No alias laccase 5 0.05 Orthogroups_2024-Update
Glyma.14G198900 No alias laccase 3 0.04 Orthogroups_2024-Update
Glyma.18G193300 No alias laccase 7 0.05 Orthogroups_2024-Update
Glyma.18G193400 No alias Laccase/Diphenol oxidase family protein 0.03 Orthogroups_2024-Update
Glyma.18G197400 No alias Laccase/Diphenol oxidase family protein 0.03 Orthogroups_2024-Update
Glyma.20G172700 No alias Laccase/Diphenol oxidase family protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G072470.1 No alias lignin laccase & EC_1.10 oxidoreductase acting on... 0.05 Orthogroups_2024-Update
HORVU3Hr1G086160.1 No alias lignin laccase & EC_1.10 oxidoreductase acting on... 0.04 Orthogroups_2024-Update
HORVU3Hr1G086200.1 No alias lignin laccase & EC_1.10 oxidoreductase acting on... 0.03 Orthogroups_2024-Update
LOC_Os01g62490 No alias laccase precursor protein, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os05g38420 No alias laccase precursor protein, putative, expressed 0.04 Orthogroups_2024-Update
MA_10430789g0010 No alias (at5g05390 : 429.0) putative laccase, a member of... 0.04 Orthogroups_2024-Update
MA_192698g0010 No alias (at5g05390 : 734.0) putative laccase, a member of... 0.03 Orthogroups_2024-Update
MA_205016g0010 No alias (at5g60020 : 637.0) putative laccase, a member of... 0.02 Orthogroups_2024-Update
MA_28768g0010 No alias (at2g38080 : 580.0) Encodes a protein with similarity to... 0.04 Orthogroups_2024-Update
MA_33288g0010 No alias (at5g05390 : 575.0) putative laccase, a member of... 0.03 Orthogroups_2024-Update
MA_75861g0010 No alias (at1g18140 : 648.0) putative laccase, a member of... 0.05 Orthogroups_2024-Update
MA_812936g0010 No alias (at5g05390 : 539.0) putative laccase, a member of... 0.03 Orthogroups_2024-Update
Mp3g20310.1 No alias Laccase-2 OS=Oryza sativa subsp. japonica... 0.02 Orthogroups_2024-Update
PSME_00010271-RA No alias (at5g05390 : 664.0) putative laccase, a member of... 0.04 Orthogroups_2024-Update
PSME_00013635-RA No alias (at5g05390 : 645.0) putative laccase, a member of... 0.04 Orthogroups_2024-Update
PSME_00013636-RA No alias (at2g40370 : 639.0) putative laccase, a member of... 0.04 Orthogroups_2024-Update
PSME_00015480-RA No alias (at5g05390 : 777.0) putative laccase, a member of... 0.04 Orthogroups_2024-Update
PSME_00024478-RA No alias (at5g05390 : 702.0) putative laccase, a member of... 0.1 Orthogroups_2024-Update
PSME_00028271-RA No alias (at5g05390 : 745.0) putative laccase, a member of... 0.03 Orthogroups_2024-Update
PSME_00028638-RA No alias (at5g05390 : 656.0) putative laccase, a member of... 0.05 Orthogroups_2024-Update
PSME_00030935-RA No alias (at5g05390 : 627.0) putative laccase, a member of... 0.04 Orthogroups_2024-Update
PSME_00035589-RA No alias (at5g05390 : 699.0) putative laccase, a member of... 0.05 Orthogroups_2024-Update
PSME_00042619-RA No alias (at5g05390 : 581.0) putative laccase, a member of... 0.05 Orthogroups_2024-Update
PSME_00044158-RA No alias (at2g40370 : 673.0) putative laccase, a member of... 0.11 Orthogroups_2024-Update
PSME_00044448-RA No alias (at5g05390 : 808.0) putative laccase, a member of... 0.07 Orthogroups_2024-Update
Potri.001G206200 No alias laccase 14 0.03 Orthogroups_2024-Update
Potri.005G200700 No alias laccase 14 0.02 Orthogroups_2024-Update
Potri.006G087100 No alias laccase 17 0.03 Orthogroups_2024-Update
Potri.007G023300 No alias laccase 11 0.04 Orthogroups_2024-Update
Potri.008G064000 No alias Laccase/Diphenol oxidase family protein 0.03 Orthogroups_2024-Update
Potri.009G034500 No alias laccase 2 0.03 Orthogroups_2024-Update
Potri.010G183600 No alias laccase 5 0.03 Orthogroups_2024-Update
Potri.011G120300 No alias laccase 17 0.02 Orthogroups_2024-Update
Potri.015G040700 No alias laccase 1 0.03 Orthogroups_2024-Update
Pp1s17_180V6 No alias laccase 90c 0.03 Orthogroups_2024-Update
Pp1s86_61V6 No alias laccase (diphenol oxidase)-like protein 0.02 Orthogroups_2024-Update
Seita.3G218000.1 No alias lignin laccase & EC_1.10 oxidoreductase acting on... 0.03 Orthogroups_2024-Update
Seita.7G330200.1 No alias EC_1.10 oxidoreductase acting on diphenol or related... 0.03 Orthogroups_2024-Update
Seita.8G018100.1 No alias EC_1.10 oxidoreductase acting on diphenol or related... 0.03 Orthogroups_2024-Update
Seita.9G453900.1 No alias lignin laccase & EC_1.10 oxidoreductase acting on... 0.03 Orthogroups_2024-Update
Sobic.001G422300.1 No alias lignin laccase & EC_1.10 oxidoreductase acting on... 0.04 Orthogroups_2024-Update
Sobic.003G352700.1 No alias lignin laccase & EC_1.10 oxidoreductase acting on... 0.04 Orthogroups_2024-Update
Sobic.005G005800.1 No alias EC_1.10 oxidoreductase acting on diphenol or related... 0.04 Orthogroups_2024-Update
Sobic.009G162800.1 No alias lignin laccase & EC_1.10 oxidoreductase acting on... 0.02 Orthogroups_2024-Update
Solyc02g085110 No alias Laccase (AHRD V3.3 *** I1J8U1_SOYBN) 0.02 Orthogroups_2024-Update
Solyc05g052340 No alias Laccase (AHRD V3.3 *** K4C1R5_SOLLC) 0.03 Orthogroups_2024-Update
Solyc06g076330 No alias Laccase (AHRD V3.3 *** M1CZK5_SOLTU) 0.03 Orthogroups_2024-Update
Solyc09g010990 No alias Laccase (AHRD V3.3 *** M1AHK0_SOLTU) 0.03 Orthogroups_2024-Update
Solyc09g014240 No alias Laccase (AHRD V3.3 *** P93366_TOBAC) 0.03 Orthogroups_2024-Update
Sopen02g029810 No alias Multicopper oxidase 0.02 Orthogroups_2024-Update
Sopen04g028460 No alias Multicopper oxidase 0.03 Orthogroups_2024-Update
Sopen06g033630 No alias Multicopper oxidase 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEA InterProScan predictions
MF GO:0016491 oxidoreductase activity IEA InterProScan predictions
BP GO:0055114 oxidation-reduction process IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0004601 peroxidase activity IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
BP GO:0006979 response to oxidative stress IEP Predicted GO
MF GO:0009055 electron transfer activity IEP Predicted GO
BP GO:0009690 cytokinin metabolic process IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
BP GO:0010817 regulation of hormone levels IEP Predicted GO
MF GO:0016209 antioxidant activity IEP Predicted GO
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Predicted GO
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Predicted GO
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Predicted GO
MF GO:0019139 cytokinin dehydrogenase activity IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
BP GO:0034754 cellular hormone metabolic process IEP Predicted GO
BP GO:0042445 hormone metabolic process IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
MF GO:0051213 dioxygenase activity IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR011707 Cu-oxidase_3 39 153
IPR011706 Cu-oxidase_2 422 554
IPR001117 Cu-oxidase 168 314
No external refs found!