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  5. PSME_00031352-RA

PSME_00031352-RA


Description : (at1g78610 : 734.0) mechanosensitive channel of small conductance-like 6 (MSL6); INVOLVED IN: transmembrane transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Membrane protein, At2g17000, predicted (InterPro:IPR016688), Mechanosensitive ion channel MscS (InterPro:IPR006685), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: mechanosensitive channel of small conductance-like 4 (TAIR:AT1G53470.1); Has 3617 Blast hits to 3602 proteins in 1077 species: Archae - 172; Bacteria - 2574; Metazoa - 1; Fungi - 205; Plants - 217; Viruses - 0; Other Eukaryotes - 448 (source: NCBI BLink). & (reliability: 1468.0) & (original description: no original description)


Gene families : OG_42_0000648 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000648_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00031352-RA
Cluster HCCA clusters: Cluster_81

Target Alias Description ECC score Gene Family Method Actions
A4A49_27673 No alias mechanosensitive ion channel protein 10 0.02 Orthogroups_2024-Update
Brara.F00117.1 No alias mechanosensitive ion channel *(MSL) 0.03 Orthogroups_2024-Update
Brara.H00129.1 No alias mechanosensitive ion channel *(MSL) 0.04 Orthogroups_2024-Update
GRMZM2G005996 No alias mechanosensitive channel of small conductance-like 5 0.02 Orthogroups_2024-Update
Glyma.04G055200 No alias mechanosensitive channel of small conductance-like 10 0.02 Orthogroups_2024-Update
Glyma.10G284300 No alias mechanosensitive channel of small conductance-like 6 0.03 Orthogroups_2024-Update
Glyma.16G075000 No alias mechanosensitive channel of small conductance-like 10 0.02 Orthogroups_2024-Update
Glyma.20G105400 No alias mechanosensitive channel of small conductance-like 6 0.03 Orthogroups_2024-Update
LOC_Os06g10410 No alias uncharacterized mscS family protein, putative, expressed 0.03 Orthogroups_2024-Update
MA_10428116g0010 No alias (at5g12080 : 486.0) mechanosensitive channel of small... 0.05 Orthogroups_2024-Update
PSME_00046328-RA No alias (at3g14810 : 231.0) mechanosensitive channel of small... 0.03 Orthogroups_2024-Update
PSME_00047299-RA No alias (at5g12080 : 587.0) mechanosensitive channel of small... 0.03 Orthogroups_2024-Update
Potri.005G246600 No alias mechanosensitive channel of small conductance-like 4 0.03 Orthogroups_2024-Update
Potri.013G073000 No alias mechanosensitive channel of small conductance-like 10 0.03 Orthogroups_2024-Update
Potri.T097200 No alias mechanosensitive channel of small conductance-like 10 0.03 Orthogroups_2024-Update
Sobic.006G177700.1 No alias mechanosensitive ion channel *(MSL) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA InterProScan predictions
BP GO:0055085 transmembrane transport IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0030246 carbohydrate binding IEP Predicted GO
MF GO:0030247 polysaccharide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
InterPro domains Description Start Stop
IPR006685 MscS_channel 888 1092
No external refs found!