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  5. PSME_00031408-RA

PSME_00031408-RA


Description : (at4g30700 : 283.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G33990.1); Has 41014 Blast hits to 14356 proteins in 276 species: Archae - 0; Bacteria - 8; Metazoa - 149; Fungi - 107; Plants - 40176; Viruses - 0; Other Eukaryotes - 574 (source: NCBI BLink). & (reliability: 566.0) & (original description: no original description)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00031408-RA
Cluster HCCA clusters: Cluster_160

Target Alias Description ECC score Gene Family Method Actions
102435 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
131641 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
27025 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
32263 No alias mitochondrial editing factor 22 0.02 Orthogroups_2024-Update
83339 No alias mitochondrial editing factor 22 0.03 Orthogroups_2024-Update
89588 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
97343 No alias pentatricopeptide (PPR) repeat-containing protein 0.02 Orthogroups_2024-Update
At3g05240 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Orthogroups_2024-Update
At5g48910 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.03 Orthogroups_2024-Update
Bradi1g14160 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
Bradi1g49477 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g50550 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G098869 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G331779 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
MA_75255g0010 No alias (at4g33170 : 685.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
Potri.009G037600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Sobic.001G282300.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
CC GO:0005777 peroxisome IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0009116 nucleoside metabolic process IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
CC GO:0042579 microbody IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
BP GO:1901657 glycosyl compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR032867 DYW_dom 273 354
IPR002885 Pentatricopeptide_repeat 35 64
IPR002885 Pentatricopeptide_repeat 116 163
IPR002885 Pentatricopeptide_repeat 5 32
IPR002885 Pentatricopeptide_repeat 194 215
IPR002885 Pentatricopeptide_repeat 91 113
No external refs found!