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  5. PSME_00031484-RA

PSME_00031484-RA


Description : (at4g18750 : 321.0) Encodes a pentatricopeptide (PPR) protein involved in leaf and root development. dot4 mutants have an aberrant midgap venation pattern in juvenile leaves and cotyledons.; DEFECTIVELY ORGANIZED TRIBUTARIES 4 (DOT4); INVOLVED IN: cotyledon vascular tissue pattern formation, phloem or xylem histogenesis, leaf vascular tissue pattern formation, leaf development; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G16860.1); Has 49728 Blast hits to 14531 proteins in 279 species: Archae - 0; Bacteria - 13; Metazoa - 210; Fungi - 140; Plants - 48642; Viruses - 0; Other Eukaryotes - 723 (source: NCBI BLink). & (q76c99|rf1_orysa : 102.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 634.0) & (original description: no original description)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00031484-RA
Cluster HCCA clusters: Cluster_179

Target Alias Description ECC score Gene Family Method Actions
MA_10429371g0010 No alias (at3g57430 : 716.0) Encodes a chloroplast RNA editing... 0.03 Orthogroups_2024-Update
MA_392600g0010 No alias (at3g03580 : 739.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
MA_519985g0010 No alias (at3g03580 : 679.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
MA_656915g0010 No alias (at4g18750 : 657.0) Encodes a pentatricopeptide (PPR)... 0.04 Orthogroups_2024-Update
MA_66417g0010 No alias (at2g22070 : 634.0) pentatricopeptide (PPR)... 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 23 40
IPR002885 Pentatricopeptide_repeat 382 406
IPR002885 Pentatricopeptide_repeat 150 167
IPR002885 Pentatricopeptide_repeat 306 354
IPR002885 Pentatricopeptide_repeat 170 214
IPR002885 Pentatricopeptide_repeat 115 149
No external refs found!