PSME_00031543-RA

Description : (at3g57490 : 396.0) Ribosomal protein S5 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome, intracellular, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S5, eukaryotic/archaeal (InterPro:IPR005711), Ribosomal protein S5, N-terminal (InterPro:IPR013810), Double-stranded RNA-binding-like (InterPro:IPR014720), Ribosomal protein S5, C-terminal (InterPro:IPR005324), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Ribosomal protein S5 (InterPro:IPR000851), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), Ribosomal protein S5, N-terminal, conserved site (InterPro:IPR018192); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5 family protein (TAIR:AT1G59359.1); Has 8574 Blast hits to 8565 proteins in 2893 species: Archae - 263; Bacteria - 5125; Metazoa - 697; Fungi - 227; Plants - 154; Viruses - 0; Other Eukaryotes - 2108 (source: NCBI BLink). & (reliability: 792.0) & (original description: no original description)

Gene families : OG_42_0002117 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002117_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00031543-RA
Cluster	HCCA clusters: Cluster_235

Target	Alias	Description	ECC score	Gene Family Method
67484	No alias	Ribosomal protein S5 family protein	0.05	Orthogroups_2024-Update
Brara.C02137.1	No alias	component *(uS5) of small ribosomal-subunit (SSU) proteome	0.02	Orthogroups_2024-Update
Brara.E00249.1	No alias	component *(uS5) of small ribosomal-subunit (SSU) proteome	0.02	Orthogroups_2024-Update
HORVU5Hr1G109910.2	No alias	component *(uS5) of small ribosomal-subunit (SSU) proteome	0.03	Orthogroups_2024-Update
Mp5g04380.1	No alias	component RPS2 of SSU proteome	0.03	Orthogroups_2024-Update
Mp5g05010.1	No alias	component RPS2 of SSU proteome	0.03	Orthogroups_2024-Update
Mp5g15970.1	No alias	component RPS2 of SSU proteome	0.05	Orthogroups_2024-Update
Pp1s10_190V6	No alias	40s ribosomal protein	0.05	Orthogroups_2024-Update
Pp1s274_5V6	No alias	40s ribosomal protein	0.04	Orthogroups_2024-Update
Seita.2G079700.1	No alias	component *(uS5) of small ribosomal-subunit (SSU) proteome	0.05	Orthogroups_2024-Update
Seita.9G044700.1	No alias	component *(uS5) of small ribosomal-subunit (SSU) proteome	0.05	Orthogroups_2024-Update
Sobic.001G046100.1	No alias	component *(uS5) of small ribosomal-subunit (SSU) proteome	0.02	Orthogroups_2024-Update
Sobic.001G046300.1	No alias	component *(uS5) of small ribosomal-subunit (SSU) proteome	0.03	Orthogroups_2024-Update
Solyc04g063290	No alias	40S ribosomal protein S2 (AHRD V3.3 *** K7WJZ4_SOLTU)	0.05	Orthogroups_2024-Update
Solyc04g074300	No alias	40S ribosomal protein S2 (AHRD V3.3 *** K7WJZ4_SOLTU)	0.05	Orthogroups_2024-Update
Sopen04g026210	No alias	Ribosomal protein S5, N-terminal domain	0.03	Orthogroups_2024-Update
Sopen04g029430	No alias	Ribosomal protein S5, N-terminal domain	0.02	Orthogroups_2024-Update
evm.model.contig_4442.1	No alias	(at1g58684 : 326.0) Ribosomal protein S5 family protein;...	0.02	Orthogroups_2024-Update
evm.model.tig00020961.135	No alias	(at3g57490 : 348.0) Ribosomal protein S5 family protein;...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	InterProScan predictions
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	Predicted GO
MF	GO:0001882	nucleoside binding	IEP	Predicted GO
MF	GO:0001883	purine nucleoside binding	IEP	Predicted GO
MF	GO:0004512	inositol-3-phosphate synthase activity	IEP	Predicted GO
MF	GO:0004576	oligosaccharyl transferase activity	IEP	Predicted GO
MF	GO:0005525	GTP binding	IEP	Predicted GO
BP	GO:0006020	inositol metabolic process	IEP	Predicted GO
BP	GO:0006021	inositol biosynthetic process	IEP	Predicted GO
BP	GO:0006066	alcohol metabolic process	IEP	Predicted GO
BP	GO:0006644	phospholipid metabolic process	IEP	Predicted GO
BP	GO:0008654	phospholipid biosynthetic process	IEP	Predicted GO
MF	GO:0016872	intramolecular lyase activity	IEP	Predicted GO
MF	GO:0017076	purine nucleotide binding	IEP	Predicted GO
MF	GO:0019001	guanyl nucleotide binding	IEP	Predicted GO
BP	GO:0019637	organophosphate metabolic process	IEP	Predicted GO
BP	GO:0019751	polyol metabolic process	IEP	Predicted GO
MF	GO:0032549	ribonucleoside binding	IEP	Predicted GO
MF	GO:0032550	purine ribonucleoside binding	IEP	Predicted GO
MF	GO:0032553	ribonucleotide binding	IEP	Predicted GO
MF	GO:0032555	purine ribonucleotide binding	IEP	Predicted GO
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Predicted GO
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Predicted GO
MF	GO:0036094	small molecule binding	IEP	Predicted GO
MF	GO:0043168	anion binding	IEP	Predicted GO
BP	GO:0044281	small molecule metabolic process	IEP	Predicted GO
BP	GO:0046165	alcohol biosynthetic process	IEP	Predicted GO
BP	GO:0046173	polyol biosynthetic process	IEP	Predicted GO
MF	GO:0097367	carbohydrate derivative binding	IEP	Predicted GO
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	Predicted GO
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	Predicted GO
BP	GO:1902600	proton transmembrane transport	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR005324	Ribosomal_S5_C	178	249
IPR013810	Ribosomal_S5_N	95	159

External Links

No external refs found!

PSME_00031543-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation