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  5. PSME_00031602-RA

PSME_00031602-RA


Description : (at1g67800 : 317.0) Copine (Calcium-dependent phospholipid-binding protein) family; FUNCTIONS IN: zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Copine (InterPro:IPR010734), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: RING domain ligase2 (TAIR:AT5G14420.2); Has 1565 Blast hits to 1560 proteins in 126 species: Archae - 0; Bacteria - 2; Metazoa - 893; Fungi - 2; Plants - 396; Viruses - 12; Other Eukaryotes - 260 (source: NCBI BLink). & (reliability: 634.0) & (original description: no original description)


Gene families : OG_42_0000469 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000469_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00031602-RA
Cluster HCCA clusters: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
PSME_00021840-RA No alias (at3g01650 : 118.0) RING domain ligase1 (RGLG1);... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
MF GO:0010333 terpene synthase activity IEP Predicted GO
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Predicted GO
MF GO:0016835 carbon-oxygen lyase activity IEP Predicted GO
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Predicted GO
MF GO:0016851 magnesium chelatase activity IEP Predicted GO
MF GO:0045300 acyl-[acyl-carrier-protein] desaturase activity IEP Predicted GO
MF GO:0051002 ligase activity, forming nitrogen-metal bonds IEP Predicted GO
MF GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes IEP Predicted GO
InterPro domains Description Start Stop
IPR010734 Copine 80 217
No external refs found!