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  5. PSME_00031935-RA

PSME_00031935-RA


Description : (at5g51980 : 250.0) Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: zinc finger WD40 repeat protein 1 (TAIR:AT4G25440.1); Has 29113 Blast hits to 15916 proteins in 570 species: Archae - 36; Bacteria - 4384; Metazoa - 10765; Fungi - 6879; Plants - 3369; Viruses - 0; Other Eukaryotes - 3680 (source: NCBI BLink). & (reliability: 500.0) & (original description: no original description)


Gene families : OG_42_0000910 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000910_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00031935-RA
Cluster HCCA clusters: Cluster_186

Target Alias Description ECC score Gene Family Method Actions
PSME_00015159-RA No alias (at4g25440 : 271.0) zinc finger WD40 repeat protein 1... 0.08 Orthogroups_2024-Update
PSME_00020863-RA No alias (at5g51980 : 292.0) Transducin/WD40 repeat-like... 0.03 Orthogroups_2024-Update
PSME_00021391-RA No alias (at4g25440 : 294.0) zinc finger WD40 repeat protein 1... 0.04 Orthogroups_2024-Update
PSME_00044724-RA No alias (at5g51980 : 189.0) Transducin/WD40 repeat-like... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0004721 phosphoprotein phosphatase activity IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
MF GO:0016791 phosphatase activity IEP Predicted GO
MF GO:0042578 phosphoric ester hydrolase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 430 461
IPR001680 WD40_repeat 466 500
No external refs found!