PSME_00031959-RA

Description : (at4g28570 : 617.0) Long-chain fatty alcohol dehydrogenase family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glucose-methanol-choline oxidoreductase, N-terminal (InterPro:IPR000172), Glucose-methanol-choline oxidoreductase, C-terminal (InterPro:IPR007867), Long-chain fatty alcohol dehydrogenase (InterPro:IPR012400); BEST Arabidopsis thaliana protein match is: Long-chain fatty alcohol dehydrogenase family protein (TAIR:AT1G03990.1); Has 3734 Blast hits to 3404 proteins in 773 species: Archae - 46; Bacteria - 2451; Metazoa - 41; Fungi - 246; Plants - 166; Viruses - 0; Other Eukaryotes - 784 (source: NCBI BLink). & (reliability: 1220.0) & (original description: no original description)

Gene families : OG_42_0001140 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001140_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00031959-RA
Cluster	HCCA clusters: Cluster_81

Target	Alias	Description	ECC score	Gene Family Method
At1g03990	No alias	Long-chain-alcohol oxidase FAO1...	0.04	Orthogroups_2024-Update
GRMZM2G066618	No alias	Long-chain fatty alcohol dehydrogenase family protein	0.03	Orthogroups_2024-Update
Glyma.09G218100	No alias	Long-chain fatty alcohol dehydrogenase family protein	0.03	Orthogroups_2024-Update
Glyma.12G132800	No alias	fatty alcohol oxidase 3	0.03	Orthogroups_2024-Update
HORVU0Hr1G015950.8	No alias	Unknown function	0.02	Orthogroups_2024-Update
LOC_Os10g33460	No alias	alcohol oxidase, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os10g33540	No alias	alcohol oxidase, putative, expressed	0.02	Orthogroups_2024-Update
MA_354155g0010	No alias	(at4g19380 : 107.0) Long-chain fatty alcohol...	0.03	Orthogroups_2024-Update
Sobic.001G221400.1	No alias	fatty alcohol oxidase *(FAO)	0.03	Orthogroups_2024-Update
Solyc08g075240	No alias	Long-chain-alcohol oxidase (AHRD V3.3 *** K4CMP1_SOLLC)	0.03	Orthogroups_2024-Update
Solyc09g072610	No alias	Long-chain-alcohol oxidase (AHRD V3.3 *** K4CUT7_SOLLC)	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0016491	oxidoreductase activity	None	Extended
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEA	InterProScan predictions
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0048037	cofactor binding	None	Extended
MF	GO:0050660	flavin adenine dinucleotide binding	IEA	InterProScan predictions
MF	GO:0050662	coenzyme binding	None	Extended
BP	GO:0055114	oxidation-reduction process	IEA	InterProScan predictions
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Predicted GO
CC	GO:0005667	transcription factor complex	IEP	Predicted GO
BP	GO:0006284	base-excision repair	IEP	Predicted GO
BP	GO:0006355	regulation of transcription, DNA-templated	IEP	Predicted GO
BP	GO:0006810	transport	IEP	Predicted GO
BP	GO:0009889	regulation of biosynthetic process	IEP	Predicted GO
BP	GO:0010468	regulation of gene expression	IEP	Predicted GO
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	Predicted GO
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0019222	regulation of metabolic process	IEP	Predicted GO
BP	GO:0031323	regulation of cellular metabolic process	IEP	Predicted GO
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Predicted GO
MF	GO:0033926	glycopeptide alpha-N-acetylgalactosaminidase activity	IEP	Predicted GO
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	Predicted GO
BP	GO:0051234	establishment of localization	IEP	Predicted GO
BP	GO:0051252	regulation of RNA metabolic process	IEP	Predicted GO
BP	GO:0055085	transmembrane transport	IEP	Predicted GO
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Predicted GO
BP	GO:0080090	regulation of primary metabolic process	IEP	Predicted GO
MF	GO:0140103	catalytic activity, acting on a glycoprotein	IEP	Predicted GO
MF	GO:0140110	transcription regulator activity	IEP	Predicted GO
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	Predicted GO
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	Predicted GO
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR007867	GMC_OxRtase_C	599	726
IPR000172	GMC_OxRdtase_N	242	505

External Links

No external refs found!

PSME_00031959-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation