Description : (at1g60390 : 380.0) polygalacturonase 1 (PG1); FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: BURP (InterPro:IPR004873); BEST Arabidopsis thaliana protein match is: polygalacturonase 2 (TAIR:AT1G70370.2); Has 3094 Blast hits to 2364 proteins in 384 species: Archae - 8; Bacteria - 697; Metazoa - 473; Fungi - 328; Plants - 614; Viruses - 4; Other Eukaryotes - 970 (source: NCBI BLink). & (reliability: 760.0) & (original description: no original description)
Gene families : OG_42_0001780 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001780_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00032046-RA | |
Cluster | HCCA clusters: Cluster_87 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
LOC_Os10g26940 | No alias | BURP domain containing protein, expressed | 0.02 | Orthogroups_2024-Update | |
MA_10430057g0010 | No alias | (at1g70370 : 422.0) polygalacturonase 2 (PG2); FUNCTIONS... | 0.04 | Orthogroups_2024-Update | |
MA_19057g0010 | No alias | (at1g60390 : 524.0) polygalacturonase 1 (PG1); FUNCTIONS... | 0.04 | Orthogroups_2024-Update | |
PSME_00011198-RA | No alias | (at1g70370 : 319.0) polygalacturonase 2 (PG2); FUNCTIONS... | 0.04 | Orthogroups_2024-Update | |
PSME_00011367-RA | No alias | (at1g60390 : 377.0) polygalacturonase 1 (PG1); FUNCTIONS... | 0.02 | Orthogroups_2024-Update | |
PSME_00024493-RA | No alias | (at1g70370 : 272.0) polygalacturonase 2 (PG2); FUNCTIONS... | 0.06 | Orthogroups_2024-Update | |
PSME_00028467-RA | No alias | (at1g70370 : 349.0) polygalacturonase 2 (PG2); FUNCTIONS... | 0.04 | Orthogroups_2024-Update | |
PSME_00039283-RA | No alias | (at1g60390 : 368.0) polygalacturonase 1 (PG1); FUNCTIONS... | 0.04 | Orthogroups_2024-Update | |
Potri.008G190000 | No alias | polygalacturonase 2 | 0.04 | Orthogroups_2024-Update | |
Potri.012G079200 | No alias | polygalacturonase 2 | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004519 | endonuclease activity | IEP | Predicted GO |
MF | GO:0004521 | endoribonuclease activity | IEP | Predicted GO |
MF | GO:0004540 | ribonuclease activity | IEP | Predicted GO |
MF | GO:0004650 | polygalacturonase activity | IEP | Predicted GO |
MF | GO:0005507 | copper ion binding | IEP | Predicted GO |
BP | GO:0006325 | chromatin organization | IEP | Predicted GO |
BP | GO:0006334 | nucleosome assembly | IEP | Predicted GO |
MF | GO:0009055 | electron transfer activity | IEP | Predicted GO |
BP | GO:0009690 | cytokinin metabolic process | IEP | Predicted GO |
BP | GO:0009772 | photosynthetic electron transport in photosystem II | IEP | Predicted GO |
BP | GO:0010817 | regulation of hormone levels | IEP | Predicted GO |
MF | GO:0015035 | protein disulfide oxidoreductase activity | IEP | Predicted GO |
MF | GO:0015036 | disulfide oxidoreductase activity | IEP | Predicted GO |
BP | GO:0016043 | cellular component organization | IEP | Predicted GO |
MF | GO:0016491 | oxidoreductase activity | IEP | Predicted GO |
MF | GO:0016788 | hydrolase activity, acting on ester bonds | IEP | Predicted GO |
MF | GO:0016831 | carboxy-lyase activity | IEP | Predicted GO |
MF | GO:0019139 | cytokinin dehydrogenase activity | IEP | Predicted GO |
MF | GO:0019842 | vitamin binding | IEP | Predicted GO |
BP | GO:0022607 | cellular component assembly | IEP | Predicted GO |
MF | GO:0030170 | pyridoxal phosphate binding | IEP | Predicted GO |
BP | GO:0034622 | cellular protein-containing complex assembly | IEP | Predicted GO |
BP | GO:0034728 | nucleosome organization | IEP | Predicted GO |
BP | GO:0034754 | cellular hormone metabolic process | IEP | Predicted GO |
BP | GO:0042445 | hormone metabolic process | IEP | Predicted GO |
MF | GO:0043015 | gamma-tubulin binding | IEP | Predicted GO |
BP | GO:0043933 | protein-containing complex subunit organization | IEP | Predicted GO |
MF | GO:0045156 | electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | IEP | Predicted GO |
MF | GO:0048037 | cofactor binding | IEP | Predicted GO |
MF | GO:0050660 | flavin adenine dinucleotide binding | IEP | Predicted GO |
MF | GO:0050662 | coenzyme binding | IEP | Predicted GO |
BP | GO:0055114 | oxidation-reduction process | IEP | Predicted GO |
BP | GO:0065003 | protein-containing complex assembly | IEP | Predicted GO |
BP | GO:0065004 | protein-DNA complex assembly | IEP | Predicted GO |
MF | GO:0070279 | vitamin B6 binding | IEP | Predicted GO |
BP | GO:0071824 | protein-DNA complex subunit organization | IEP | Predicted GO |
BP | GO:0071840 | cellular component organization or biogenesis | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR004873 | BURP_dom | 359 | 509 |
No external refs found! |