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  5. PSME_00032072-RA

PSME_00032072-RA


Description : (at3g56580 : 108.0) RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING-H2 finger C1A (TAIR:AT2G40830.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 216.0) & (original description: no original description)


Gene families : OG_42_0000043 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000043_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00032072-RA

Target Alias Description ECC score Gene Family Method Actions
A4A49_41488 No alias e3 ubiquitin-protein ligase rduf1 0.04 Orthogroups_2024-Update
Bradi1g35540 No alias RING/U-box superfamily protein 0.07 Orthogroups_2024-Update
Bradi1g52440 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.20G102400 No alias COP1-interacting protein 8 0.03 Orthogroups_2024-Update
LOC_Os03g26420 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os08g38060 No alias RING finger protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os09g06740 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.01 Orthogroups_2024-Update
LOC_Os11g04281 No alias zinc finger, C3HC4 type domain containing protein 0.02 Orthogroups_2024-Update
LOC_Os11g05230 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os12g04090 No alias zinc finger, C3HC4 type domain containing protein 0.02 Orthogroups_2024-Update
LOC_Os12g04450 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os12g04590 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.04 Orthogroups_2024-Update
MA_9328282g0010 No alias (at5g01980 : 161.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
Potri.010G168300 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Seita.1G054700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.1G222900.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.8G163700.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc02g065650 No alias LOW QUALITY:RING/U-box superfamily protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc02g082890 No alias LOW QUALITY:RING/U-box superfamily protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Sopen02g015860 No alias Ring finger domain 0.03 Orthogroups_2024-Update
Sopen08g024560 No alias Ring finger domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 296 338
IPR001841 Znf_RING 3 26
No external refs found!