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  5. PSME_00032156-RA

PSME_00032156-RA


Description : (at1g20510 : 519.0) OPC-8:0 CoA ligase1 (OPCL1); FUNCTIONS IN: 4-coumarate-CoA ligase activity; INVOLVED IN: phenylpropanoid metabolic process, jasmonic acid biosynthetic process, response to wounding; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G20500.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (o24146|4cl2_tobac : 299.0) 4-coumarate--CoA ligase 2 (EC 6.2.1.12) (4CL 2) (4-coumaroyl-CoA synthase 2) - Nicotiana tabacum (Common tobacco) & (reliability: 1038.0) & (original description: no original description)


Gene families : OG_42_0000133 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000133_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00032156-RA

Target Alias Description ECC score Gene Family Method Actions
At4g19010 No alias 4-coumarate--CoA ligase-like 6... 0.02 Orthogroups_2024-Update
Brara.C03824.1 No alias p-coumarate 0.04 Orthogroups_2024-Update
Glyma.06G171900 No alias AMP-dependent synthetase and ligase family protein 0.02 Orthogroups_2024-Update
Glyma.15G001700 No alias 4-coumarate:CoA ligase 2 0.01 Orthogroups_2024-Update
Kfl00698_0040 kfl00698_0040_v1.... (at1g62940 : 187.0) encodes an acyl-CoA synthetase, has... 0.02 Orthogroups_2024-Update
LOC_Os03g04000 No alias AMP-binding domain containing protein, expressed 0.01 Orthogroups_2024-Update
MA_135674g0010 No alias (at4g05160 : 371.0) Encodes a peroxisomal protein... 0.03 Orthogroups_2024-Update
Potri.015G092300 No alias AMP-dependent synthetase and ligase family protein 0.02 Orthogroups_2024-Update
Pp1s20_346V6 No alias 4-coumarate: ligase 0.02 Orthogroups_2024-Update
Solyc11g069050 No alias 4-coumarate:CoA ligase-like protein (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Sopen12g021460 No alias AMP-binding enzyme 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000873 AMP-dep_Synth/Lig 63 403
IPR025110 AMP-bd_C 412 487
No external refs found!