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  5. Sopen06g003960

Sopen06g003960


Description : Pectinesterase


Gene families : OG_42_0000066 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000066_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen06g003960
Cluster HCCA clusters: Cluster_104

Target Alias Description ECC score Gene Family Method Actions
114014 No alias pectin methylesterase PCR fragment F 0.02 Orthogroups_2024-Update
A4A49_03154 No alias putative pectinesterasepectinesterase inhibitor 60 0.03 Orthogroups_2024-Update
A4A49_16804 No alias putative pectinesterasepectinesterase inhibitor 12 0.02 Orthogroups_2024-Update
A4A49_27968 No alias pectinesterasepectinesterase inhibitor 18 0.02 Orthogroups_2024-Update
A4A49_32529 No alias putative pectinesterasepectinesterase inhibitor 28 0.04 Orthogroups_2024-Update
A4A49_41442 No alias pectinesterase 2 0.03 Orthogroups_2024-Update
At1g11370 No alias Probable pectinesterase 56... 0.02 Orthogroups_2024-Update
At2g26440 No alias Probable pectinesterase/pectinesterase inhibitor 12... 0.02 Orthogroups_2024-Update
At3g60730 No alias Pectinesterase [Source:UniProtKB/TrEMBL;Acc:A0A178V7L0] 0.05 Orthogroups_2024-Update
Bradi1g16780 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.02 Orthogroups_2024-Update
Bradi2g11860 No alias pectin methylesterase 3 0.03 Orthogroups_2024-Update
Brara.D02605.1 No alias EC_3.1 hydrolase acting on ester bond & pectin methylesterase 0.02 Orthogroups_2024-Update
Brara.E00332.1 No alias EC_3.1 hydrolase acting on ester bond & pectin methylesterase 0.03 Orthogroups_2024-Update
Brara.H01276.1 No alias EC_3.1 hydrolase acting on ester bond & pectin methylesterase 0.04 Orthogroups_2024-Update
Brara.J00839.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G321870 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Orthogroups_2024-Update
Glyma.02G008400 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Orthogroups_2024-Update
Glyma.10G017100 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.02 Orthogroups_2024-Update
Glyma.13G115400 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.02 Orthogroups_2024-Update
LOC_Os01g13320 No alias pectinesterase, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os01g21034 No alias pectinesterase, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os01g57854 No alias pectinesterase, putative, expressed 0.02 Orthogroups_2024-Update
MA_10434624g0020 No alias (at1g53830 : 387.0) encodes a pectin methylesterase;... 0.02 Orthogroups_2024-Update
MA_10435891g0010 No alias (o04887|pme2_citsi : 389.0) Pectinesterase-2 precursor... 0.02 Orthogroups_2024-Update
PSME_00007922-RA No alias (at1g53830 : 539.0) encodes a pectin methylesterase;... 0.03 Orthogroups_2024-Update
PSME_00029101-RA No alias (at1g53830 : 536.0) encodes a pectin methylesterase;... 0.03 Orthogroups_2024-Update
PSME_00043969-RA No alias (at1g53830 : 497.0) encodes a pectin methylesterase;... 0.03 Orthogroups_2024-Update
PSME_00048380-RA No alias (at4g02330 : 476.0) ATPMEPCRB; FUNCTIONS IN:... 0.03 Orthogroups_2024-Update
Potri.012G014500 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.04 Orthogroups_2024-Update
Potri.015G013700 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Orthogroups_2024-Update
Seita.4G042100.1 No alias EC_3.1 hydrolase acting on ester bond & pectin methylesterase 0.02 Orthogroups_2024-Update
Seita.5G022500.1 No alias EC_3.1 hydrolase acting on ester bond & pectin methylesterase 0.03 Orthogroups_2024-Update
Sobic.007G146300.1 No alias EC_3.1 hydrolase acting on ester bond & pectin methylesterase 0.03 Orthogroups_2024-Update
Solyc02g080220 No alias Pectinesterase (AHRD V3.3 *** K4B9P3_SOLLC) 0.03 Orthogroups_2024-Update
Solyc03g123630 No alias pectin methylesterase 0.03 Orthogroups_2024-Update
Solyc06g009190 No alias Pectinesterase (AHRD V3.3 *** K4C3U9_SOLLC) 0.04 Orthogroups_2024-Update
Sopen01g043460 No alias Pectinesterase 0.02 Orthogroups_2024-Update
Sopen03g023110 No alias Pectinesterase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004857 enzyme inhibitor activity IEA InterProScan predictions
MF GO:0030599 pectinesterase activity IEA InterProScan predictions
BP GO:0042545 cell wall modification IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR006501 Pectinesterase_inhib_dom 47 198
IPR000070 Pectinesterase_cat 250 546
No external refs found!