1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00032386-RA

PSME_00032386-RA


Description : (at5g11100 : 191.0) SYTD; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT1G05500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 382.0) & (original description: no original description)


Gene families : OG_42_0000345 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000345_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00032386-RA
Cluster HCCA clusters: Cluster_760

Target Alias Description ECC score Gene Family Method Actions
Glyma.14G220000 No alias Calcium-dependent lipid-binding (CaLB domain) family protein 0.04 Orthogroups_2024-Update
Kfl00130_0160 kfl00130_0160_v1.1 (at5g11100 : 194.0) SYTD; FUNCTIONS IN:... 0.01 Orthogroups_2024-Update
LOC_Os02g25060 No alias NTMC2Type1.2 protein, putative, expressed 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0008037 cell recognition IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
InterPro domains Description Start Stop
IPR000008 C2_dom 307 343
IPR000008 C2_dom 20 51
No external refs found!