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  5. PSME_00032394-RA

PSME_00032394-RA


Description : (at5g10980 : 93.6) Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT4G40030.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p08437|h3_volca : 93.6) Histone H3 - Volvox carteri & (reliability: 187.2) & (original description: no original description)


Gene families : OG_42_0000090 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000090_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00032394-RA
Cluster HCCA clusters: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
At3g27360 No alias Histone H3 [Source:UniProtKB/TrEMBL;Acc:A0A178WG20] 0.02 Orthogroups_2024-Update
Bradi2g27720 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Brara.J02315.1 No alias histone *(H3) 0.02 Orthogroups_2024-Update
HORVU6Hr1G007470.1 No alias histone *(H3) 0.02 Orthogroups_2024-Update
MA_10432805g0020 No alias (at5g65360 : 226.0) Histone superfamily protein;... 0.05 Orthogroups_2024-Update
MA_3961874g0010 No alias (at5g65360 : 207.0) Histone superfamily protein;... 0.02 Orthogroups_2024-Update
PSME_00010216-RA No alias (at5g10980 : 266.0) Histone superfamily protein;... 0.04 Orthogroups_2024-Update
Pp1s3_367V6 No alias histone h3 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
CC GO:0031090 organelle membrane IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 26 88
No external refs found!