1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00032396-RA

PSME_00032396-RA


Description : (at3g11980 : 84.7) Similar to fatty acid reductases.; MALE STERILITY 2 (MS2); FUNCTIONS IN: fatty-acyl-CoA reductase (alcohol-forming) activity, oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor; INVOLVED IN: microsporogenesis, pollen exine formation; LOCATED IN: chloroplast; EXPRESSED IN: leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Male sterility (InterPro:IPR004262), NAD(P)-binding domain (InterPro:IPR016040), Male sterility, NAD-binding (InterPro:IPR013120); BEST Arabidopsis thaliana protein match is: fatty acid reductase 6 (TAIR:AT3G56700.1); Has 2390 Blast hits to 2358 proteins in 427 species: Archae - 4; Bacteria - 606; Metazoa - 985; Fungi - 290; Plants - 282; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink). & (reliability: 160.2) & (original description: no original description)


Gene families : OG_42_0000301 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000301_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00032396-RA
Cluster HCCA clusters: Cluster_275

Target Alias Description ECC score Gene Family Method Actions
Bradi2g47121 No alias fatty acid reductase 4 0.03 Orthogroups_2024-Update
Bradi3g42780 No alias Jojoba acyl CoA reductase-related male sterility protein 0.02 Orthogroups_2024-Update
Bradi4g38460 No alias fatty acid reductase 4 0.03 Orthogroups_2024-Update
Brara.G01715.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Glyma.13G317700 No alias Jojoba acyl CoA reductase-related male sterility protein 0.03 Orthogroups_2024-Update
PSME_00013948-RA No alias (at3g11980 : 481.0) Similar to fatty acid reductases.;... 0.02 Orthogroups_2024-Update
Pp1s31_174V6 No alias male sterility protein 2 0.02 Orthogroups_2024-Update
Seita.9G527200.1 No alias fatty acyl-CoA reductase *(MS2) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Predicted GO
MF GO:0004055 argininosuccinate synthase activity IEP Predicted GO
MF GO:0004379 glycylpeptide N-tetradecanoyltransferase activity IEP Predicted GO
MF GO:0004673 protein histidine kinase activity IEP Predicted GO
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Predicted GO
CC GO:0005618 cell wall IEP Predicted GO
BP GO:0006073 cellular glucan metabolic process IEP Predicted GO
MF GO:0008198 ferrous iron binding IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
MF GO:0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor IEP Predicted GO
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Predicted GO
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Predicted GO
MF GO:0019107 myristoyltransferase activity IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
BP GO:0044042 glucan metabolic process IEP Predicted GO
BP GO:0044264 cellular polysaccharide metabolic process IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
MF GO:0051743 red chlorophyll catabolite reductase activity IEP Predicted GO
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR013120 Male_sterile_NAD-bd 9 141
No external refs found!