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  5. Sopen06g004030

Sopen06g004030


Description : ABC transporter transmembrane region


Gene families : OG_42_0000040 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000040_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen06g004030
Cluster HCCA clusters: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
123915 No alias P-glycoprotein 11 0.03 Orthogroups_2024-Update
A4A49_00814 No alias abc transporter b family member 4 0.02 Orthogroups_2024-Update
Bradi2g36897 No alias ATP binding cassette subfamily B4 0.02 Orthogroups_2024-Update
Bradi2g47360 No alias P-glycoprotein 11 0.02 Orthogroups_2024-Update
Bradi2g47410 No alias ATP binding cassette subfamily B4 0.02 Orthogroups_2024-Update
Brara.F03152.1 No alias subfamily ABCB transporter 0.01 Orthogroups_2024-Update
Glyma.10G137600 No alias ATP binding cassette subfamily B4 0.03 Orthogroups_2024-Update
Glyma.14G220200 No alias P-glycoprotein 13 0.03 Orthogroups_2024-Update
HORVU4Hr1G077060.4 No alias ABC-B-type transporter *(AMN3) & subfamily ABCB transporter 0.02 Orthogroups_2024-Update
LOC_Os05g47490 No alias MDR-like ABC transporter, putative, expressed 0.02 Orthogroups_2024-Update
MA_10436810g0020 No alias (at3g28345 : 992.0) ABC transporter family protein;... 0.03 Orthogroups_2024-Update
MA_138894g0010 No alias (at2g47000 : 1332.0) Multidrug resistance ... 0.02 Orthogroups_2024-Update
MA_635039g0010 No alias (at1g02520 : 559.0) P-glycoprotein 11 (PGP11); FUNCTIONS... 0.03 Orthogroups_2024-Update
PSME_00023263-RA No alias (q6yuu5|mdr_orysa : 1044.0) Putative multidrug... 0.02 Orthogroups_2024-Update
PSME_00038380-RA No alias (q6yuu5|mdr_orysa : 1204.0) Putative multidrug... 0.03 Orthogroups_2024-Update
Potri.014G113000 No alias ATP binding cassette subfamily B4 0.03 Orthogroups_2024-Update
Potri.014G113500 No alias P-glycoprotein 21 0.04 Orthogroups_2024-Update
Potri.018G141300 No alias ABC transporter family protein 0.03 Orthogroups_2024-Update
Pp1s397_2V6 No alias multidrug pheromone mdr abc transporter family 0.02 Orthogroups_2024-Update
Seita.5G283500.1 No alias subfamily ABCB transporter 0.02 Orthogroups_2024-Update
Sobic.003G267700.1 No alias subfamily ABCB transporter 0.04 Orthogroups_2024-Update
Sobic.006G014800.1 No alias ABC-B-type transporter *(AMN3) & subfamily ABCB transporter 0.02 Orthogroups_2024-Update
Sobic.006G236700.1 No alias auxin efflux transporter *(ABCB19) & subfamily ABCB transporter 0.04 Orthogroups_2024-Update
Solyc03g122070 No alias ABC transporter B family-like protein (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Solyc06g009290 No alias ABC transporter B family protein (AHRD V3.3 *** G7IBR0_MEDTR) 0.11 Orthogroups_2024-Update
Solyc06g072960 No alias No description available 0.02 Orthogroups_2024-Update
Sopen03g024530 No alias ABC transporter transmembrane region 0.05 Orthogroups_2024-Update
Sopen09g003060 No alias ABC transporter transmembrane region 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
CC GO:0016021 integral component of membrane IEA InterProScan predictions
MF GO:0016887 ATPase activity IEA InterProScan predictions
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEA InterProScan predictions
BP GO:0055085 transmembrane transport IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR011527 ABC1_TM_dom 59 332
IPR011527 ABC1_TM_dom 722 994
IPR003439 ABC_transporter-like 403 549
IPR003439 ABC_transporter-like 1062 1212
No external refs found!