PSME_00032471-RA

Description : (at1g68840 : 300.0) Rav2 is part of a complex that has been named `regulator of the (H+)-ATPase of the vacuolar and endosomal membranes' (RAVE); related to ABI3/VP1 2 (RAV2); FUNCTIONS IN: transcription repressor activity, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Transcriptional factor B3 (InterPro:IPR003340), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2/B3 transcription factor family protein (TAIR:AT1G25560.1). & (reliability: 600.0) & (original description: no original description)

Gene families : OG_42_0000305 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000305_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00032471-RA
Cluster	HCCA clusters: Cluster_173

Target	Alias	Description	ECC score	Gene Family Method
At1g68840	No alias	TEM2 [Source:UniProtKB/TrEMBL;Acc:A0A178WNP0]	0.03	Orthogroups_2024-Update
At3g11580	No alias	AP2/B3-like transcriptional factor family protein...	0.03	Orthogroups_2024-Update
Brara.A03401.1	No alias	RAV/NGATHA-type transcription factor	0.04	Orthogroups_2024-Update
Brara.B03202.1	No alias	RAV/NGATHA-type transcription factor & AP2-RAV-type...	0.03	Orthogroups_2024-Update
Brara.E00866.1	No alias	RAV/NGATHA-type transcription factor	0.03	Orthogroups_2024-Update
Brara.E02919.1	No alias	RAV/NGATHA-type transcription factor	0.03	Orthogroups_2024-Update
Brara.F03325.1	No alias	RAV/NGATHA-type transcription factor & AP2-RAV-type...	0.02	Orthogroups_2024-Update
Brara.H03121.1	No alias	RAV/NGATHA-type transcription factor	0.03	Orthogroups_2024-Update
Brara.I03099.1	No alias	RAV/NGATHA-type transcription factor & AP2-RAV-type...	0.03	Orthogroups_2024-Update
Brara.J02597.1	No alias	RAV/NGATHA-type transcription factor	0.03	Orthogroups_2024-Update
GRMZM2G082227	No alias	AP2/B3-like transcriptional factor family protein	0.02	Orthogroups_2024-Update
GRMZM2G328742	No alias	AP2/B3-like transcriptional factor family protein	0.03	Orthogroups_2024-Update
Glyma.02G099500	No alias	AP2/B3 transcription factor family protein	0.03	Orthogroups_2024-Update
Glyma.10G076100	No alias	AP2/B3-like transcriptional factor family protein	0.03	Orthogroups_2024-Update
Glyma.10G204400	No alias	AP2/B3 transcription factor family protein	0.05	Orthogroups_2024-Update
HORVU3Hr1G010240.1	No alias	RAV/NGATHA-type transcription factor & AP2-RAV-type...	0.02	Orthogroups_2024-Update
HORVU3Hr1G064640.4	No alias	RAV/NGATHA-type transcription factor & AP2-RAV-type...	0.03	Orthogroups_2024-Update
LOC_Os01g04800	No alias	B3 DNA binding domain containing protein, expressed	0.02	Orthogroups_2024-Update
LOC_Os05g47650	No alias	B3 DNA binding domain containing protein, expressed	0.02	Orthogroups_2024-Update
LOC_Os10g39190	No alias	B3 DNA binding domain containing protein, expressed	0.02	Orthogroups_2024-Update
MA_10433425g0010	No alias	(at1g25560 : 91.3) Encodes a member of the RAV...	0.05	Orthogroups_2024-Update
Sobic.003G078100.1	No alias	RAV/NGATHA-type transcription factor & AP2-RAV-type...	0.03	Orthogroups_2024-Update
Sopen08g004540	No alias	B3 DNA binding domain	0.04	Orthogroups_2024-Update
Sopen10g032690	No alias	B3 DNA binding domain	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0003700	DNA-binding transcription factor activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000272	polysaccharide catabolic process	IEP	Predicted GO
MF	GO:0004014	adenosylmethionine decarboxylase activity	IEP	Predicted GO
MF	GO:0004888	transmembrane signaling receptor activity	IEP	Predicted GO
MF	GO:0004970	ionotropic glutamate receptor activity	IEP	Predicted GO
MF	GO:0005216	ion channel activity	IEP	Predicted GO
MF	GO:0005230	extracellular ligand-gated ion channel activity	IEP	Predicted GO
BP	GO:0006352	DNA-templated transcription, initiation	IEP	Predicted GO
BP	GO:0006576	cellular biogenic amine metabolic process	IEP	Predicted GO
BP	GO:0006595	polyamine metabolic process	IEP	Predicted GO
BP	GO:0006596	polyamine biosynthetic process	IEP	Predicted GO
BP	GO:0006597	spermine biosynthetic process	IEP	Predicted GO
BP	GO:0007165	signal transduction	IEP	Predicted GO
MF	GO:0008066	glutamate receptor activity	IEP	Predicted GO
BP	GO:0008215	spermine metabolic process	IEP	Predicted GO
BP	GO:0008216	spermidine metabolic process	IEP	Predicted GO
BP	GO:0008295	spermidine biosynthetic process	IEP	Predicted GO
BP	GO:0009308	amine metabolic process	IEP	Predicted GO
BP	GO:0009309	amine biosynthetic process	IEP	Predicted GO
MF	GO:0015267	channel activity	IEP	Predicted GO
MF	GO:0015276	ligand-gated ion channel activity	IEP	Predicted GO
MF	GO:0016161	beta-amylase activity	IEP	Predicted GO
MF	GO:0022803	passive transmembrane transporter activity	IEP	Predicted GO
MF	GO:0022824	transmitter-gated ion channel activity	IEP	Predicted GO
MF	GO:0022834	ligand-gated channel activity	IEP	Predicted GO
MF	GO:0022835	transmitter-gated channel activity	IEP	Predicted GO
MF	GO:0022836	gated channel activity	IEP	Predicted GO
MF	GO:0022838	substrate-specific channel activity	IEP	Predicted GO
MF	GO:0022839	ion gated channel activity	IEP	Predicted GO
MF	GO:0030246	carbohydrate binding	IEP	Predicted GO
MF	GO:0030594	neurotransmitter receptor activity	IEP	Predicted GO
MF	GO:0038023	signaling receptor activity	IEP	Predicted GO
BP	GO:0042401	cellular biogenic amine biosynthetic process	IEP	Predicted GO
BP	GO:0044106	cellular amine metabolic process	IEP	Predicted GO
MF	GO:0060089	molecular transducer activity	IEP	Predicted GO
BP	GO:0097164	ammonium ion metabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	271	375
IPR001471	AP2/ERF_dom	152	199

External Links

No external refs found!

PSME_00032471-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation