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  5. PSME_00032543-RA

PSME_00032543-RA


Description : (at5g22360 : 201.0) Member of Synaptobrevin-like AtVAMP7C, v-SNARE protein family.; vesicle-associated membrane protein 714 (VAMP714); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; LOCATED IN: Golgi apparatus, vacuole, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: vesicle-associated membrane protein 713 (TAIR:AT5G11150.1); Has 2317 Blast hits to 2315 proteins in 268 species: Archae - 0; Bacteria - 0; Metazoa - 867; Fungi - 487; Plants - 553; Viruses - 0; Other Eukaryotes - 410 (source: NCBI BLink). & (reliability: 402.0) & (original description: no original description)


Gene families : OG_42_0000264 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000264_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00032543-RA
Cluster HCCA clusters: Cluster_827

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G037912 No alias vesicle-associated membrane protein 726 0.02 Orthogroups_2024-Update
GRMZM2G423472 No alias vesicle-associated membrane protein 726 0.02 Orthogroups_2024-Update
Glyma.14G035500 No alias vesicle-associated membrane protein 713 0.05 Orthogroups_2024-Update
Glyma.17G111000 No alias vesicle-associated membrane protein 713 0.03 Orthogroups_2024-Update
Glyma.20G022200 No alias vesicle-associated membrane protein 726 0.02 Orthogroups_2024-Update
Potri.003G177700 No alias vesicle-associated membrane protein 726 0.02 Orthogroups_2024-Update
Potri.012G119600 No alias vesicle-associated membrane protein 726 0.03 Orthogroups_2024-Update
Sobic.008G191600.1 No alias R-type component *(VAMP721/VAMP722) of SNARE cell-plate... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0016021 integral component of membrane IEA InterProScan predictions
BP GO:0016192 vesicle-mediated transport IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004525 ribonuclease III activity IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
BP GO:0006952 defense response IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
CC GO:0031090 organelle membrane IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
InterPro domains Description Start Stop
IPR010908 Longin_dom 1 35
IPR001388 Synaptobrevin 80 154
No external refs found!