Sopen06g004250


Description : PPR repeat


Gene families : OG_42_0009882 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009882_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen06g004250
Cluster HCCA clusters: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
Glyma.03G001300 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.013G054400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Solyc06g009620 No alias Pentatricopeptide repeat superfamily protein, putative... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 56 80
IPR002885 Pentatricopeptide_repeat 293 312
IPR002885 Pentatricopeptide_repeat 189 212
IPR002885 Pentatricopeptide_repeat 217 265
IPR002885 Pentatricopeptide_repeat 112 153
No external refs found!