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  5. PSME_00033015-RA

PSME_00033015-RA


Description : (at4g13970 : 244.0) zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: SWIM zinc finger family protein (TAIR:AT1G60560.1); Has 80 Blast hits to 80 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 25; Fungi - 2; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 442.0) & (original description: no original description)


Gene families : OG_42_0004674 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004674_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00033015-RA
Cluster HCCA clusters: Cluster_159

Target Alias Description ECC score Gene Family Method Actions
PSME_00020383-RA No alias (at1g60560 : 148.0) SWIM zinc finger family protein;... 0.04 Orthogroups_2024-Update
PSME_00040822-RA No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0003777 microtubule motor activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
MF GO:0005516 calmodulin binding IEP Predicted GO
BP GO:0006928 movement of cell or subcellular component IEP Predicted GO
BP GO:0007017 microtubule-based process IEP Predicted GO
BP GO:0007018 microtubule-based movement IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
BP GO:0018208 peptidyl-proline modification IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!