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  5. Sopen06g004430

Sopen06g004430


Description : PPR repeat


Gene families : OG_42_0011071 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0011071_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen06g004430
Cluster HCCA clusters: Cluster_185

Target Alias Description ECC score Gene Family Method Actions
Glyma.17G099500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Solyc06g009800 No alias Pentatricopeptide repeat-containing protein family (AHRD... 0.05 Orthogroups_2024-Update
Sopen12g026150 No alias PPR repeat 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 335 381
IPR002885 Pentatricopeptide_repeat 205 232
IPR002885 Pentatricopeptide_repeat 145 166
IPR002885 Pentatricopeptide_repeat 235 261
IPR002885 Pentatricopeptide_repeat 173 199
IPR002885 Pentatricopeptide_repeat 308 333
IPR002885 Pentatricopeptide_repeat 409 433
No external refs found!