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  5. PSME_00033063-RA

PSME_00033063-RA


Description : (at5g44360 : 384.0) FAD-binding Berberine family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Oxygen oxidoreductase covalent FAD-binding site (InterPro:IPR006093), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT4G20860.1); Has 4918 Blast hits to 4788 proteins in 768 species: Archae - 52; Bacteria - 2097; Metazoa - 4; Fungi - 1714; Plants - 788; Viruses - 0; Other Eukaryotes - 263 (source: NCBI BLink). & (reliability: 768.0) & (original description: no original description)


Gene families : OG_42_0000069 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000069_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00033063-RA
Cluster HCCA clusters: Cluster_87

Target Alias Description ECC score Gene Family Method Actions
A4A49_16806 No alias flavin-dependent oxidoreductase fox2 0.04 Orthogroups_2024-Update
A4A49_21867 No alias flavin-dependent oxidoreductase fox1 0.03 Orthogroups_2024-Update
A4A49_37478 No alias flavin-dependent oxidoreductase fox2 0.02 Orthogroups_2024-Update
A4A49_43067 No alias reticuline oxidase-like protein 0.02 Orthogroups_2024-Update
AC203909.3_FG007 No alias FAD-binding Berberine family protein 0.04 Orthogroups_2024-Update
At1g34575 No alias Berberine bridge enzyme-like 14... 0.04 Orthogroups_2024-Update
Bradi1g38250 No alias FAD-binding Berberine family protein 0.02 Orthogroups_2024-Update
Bradi3g09380 No alias FAD-binding Berberine family protein 0.03 Orthogroups_2024-Update
Bradi4g18970 No alias FAD-binding Berberine family protein 0.03 Orthogroups_2024-Update
Brara.A01131.1 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor 0.02 Orthogroups_2024-Update
Brara.D02108.1 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor 0.03 Orthogroups_2024-Update
Brara.E00947.1 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor 0.02 Orthogroups_2024-Update
Brara.G00508.1 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor 0.06 Orthogroups_2024-Update
Brara.G01552.1 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor 0.02 Orthogroups_2024-Update
Brara.I01843.1 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor 0.03 Orthogroups_2024-Update
Brara.I01844.1 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor 0.02 Orthogroups_2024-Update
Brara.I02779.1 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor 0.04 Orthogroups_2024-Update
Brara.I03596.1 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor 0.02 Orthogroups_2024-Update
Glyma.04G113500 No alias FAD-binding Berberine family protein 0.03 Orthogroups_2024-Update
Glyma.08G059000 No alias FAD-binding Berberine family protein 0.02 Orthogroups_2024-Update
Glyma.08G080000 No alias FAD-binding Berberine family protein 0.03 Orthogroups_2024-Update
Glyma.08G080700 No alias FAD-binding Berberine family protein 0.04 Orthogroups_2024-Update
Glyma.15G133200 No alias FAD-binding Berberine family protein 0.03 Orthogroups_2024-Update
Glyma.15G134200 No alias FAD-binding Berberine family protein 0.04 Orthogroups_2024-Update
HORVU1Hr1G091500.1 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor 0.03 Orthogroups_2024-Update
LOC_Os02g14090 No alias berberine and berberine like domain containing protein, expressed 0.02 Orthogroups_2024-Update
MA_132990g0010 No alias (at4g20860 : 342.0) FAD-binding Berberine family... 0.03 Orthogroups_2024-Update
MA_162773g0010 No alias (at4g20860 : 377.0) FAD-binding Berberine family... 0.04 Orthogroups_2024-Update
MA_260168g0010 No alias (at1g30760 : 184.0) FAD-binding Berberine family... 0.03 Orthogroups_2024-Update
MA_613919g0010 No alias (at5g44390 : 411.0) FAD-binding Berberine family... 0.03 Orthogroups_2024-Update
PSME_00033064-RA No alias (at4g20860 : 370.0) FAD-binding Berberine family... 0.04 Orthogroups_2024-Update
PSME_00034781-RA No alias (at5g44390 : 411.0) FAD-binding Berberine family... 0.04 Orthogroups_2024-Update
Potri.001G440700 No alias FAD-binding Berberine family protein 0.03 Orthogroups_2024-Update
Potri.001G459100 No alias FAD-binding Berberine family protein 0.05 Orthogroups_2024-Update
Potri.001G459500 No alias FAD-binding Berberine family protein 0.03 Orthogroups_2024-Update
Potri.001G470100 No alias FAD-binding Berberine family protein 0.03 Orthogroups_2024-Update
Potri.011G158400 No alias FAD-binding Berberine family protein 0.02 Orthogroups_2024-Update
Potri.011G158600 No alias FAD-binding Berberine family protein 0.03 Orthogroups_2024-Update
Potri.011G158700 No alias FAD-binding Berberine family protein 0.03 Orthogroups_2024-Update
Potri.011G163000 No alias FAD-binding Berberine family protein 0.04 Orthogroups_2024-Update
Potri.019G063400 No alias FAD-binding Berberine family protein 0.04 Orthogroups_2024-Update
Seita.4G178200.1 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor 0.02 Orthogroups_2024-Update
Seita.4G178600.1 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor 0.03 Orthogroups_2024-Update
Seita.6G055100.1 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor 0.08 Orthogroups_2024-Update
Seita.6G216800.1 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor 0.03 Orthogroups_2024-Update
Sobic.010G162700.1 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor 0.03 Orthogroups_2024-Update
Sobic.010G162900.1 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor 0.03 Orthogroups_2024-Update
Solyc02g022860 No alias FAD-binding Berberine family protein, putative (AHRD... 0.03 Orthogroups_2024-Update
Solyc02g079450 No alias FAD-binding Berberine family protein (AHRD V3.3 *** AT5G44360.2) 0.02 Orthogroups_2024-Update
Solyc03g006690 No alias LOW QUALITY:FAD-binding Berberine family protein (AHRD... 0.04 Orthogroups_2024-Update
Sopen02g019250 No alias Berberine and berberine like 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0016491 oxidoreductase activity IEA InterProScan predictions
MF GO:0050660 flavin adenine dinucleotide binding IEA InterProScan predictions
BP GO:0055114 oxidation-reduction process IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
MF GO:0008194 UDP-glycosyltransferase activity IEP Predicted GO
BP GO:0009250 glucan biosynthetic process IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
BP GO:0016051 carbohydrate biosynthetic process IEP Predicted GO
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016759 cellulose synthase activity IEP Predicted GO
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
BP GO:0030243 cellulose metabolic process IEP Predicted GO
BP GO:0030244 cellulose biosynthetic process IEP Predicted GO
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Predicted GO
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Predicted GO
MF GO:0035251 UDP-glucosyltransferase activity IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044262 cellular carbohydrate metabolic process IEP Predicted GO
MF GO:0046527 glucosyltransferase activity IEP Predicted GO
BP GO:0051259 protein complex oligomerization IEP Predicted GO
BP GO:0051260 protein homooligomerization IEP Predicted GO
BP GO:0051273 beta-glucan metabolic process IEP Predicted GO
BP GO:0051274 beta-glucan biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR006094 Oxid_FAD_bind_N 75 207
IPR012951 BBE 457 514
No external refs found!