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  5. PSME_00033065-RA

PSME_00033065-RA


Description : (at1g80170 : 428.0) Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: plant-type cell wall; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G70500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p35336|pglr_actch : 409.0) Polygalacturonase precursor (EC 3.2.1.15) (PG) (Pectinase) - Actinidia chinensis (Kiwi) (Yangtao) & (reliability: 856.0) & (original description: no original description)


Gene families : OG_42_0000306 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000306_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00033065-RA
Cluster HCCA clusters: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
A4A49_07434 No alias putative polygalacturonase 0.02 Orthogroups_2024-Update
A4A49_14444 No alias putative polygalacturonase 0.04 Orthogroups_2024-Update
A4A49_27120 No alias putative polygalacturonase 0.04 Orthogroups_2024-Update
Bradi1g04641 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Brara.G02021.1 No alias EC_3.2 glycosylase 0.02 Orthogroups_2024-Update
Glyma.10G103200 No alias polygalacturonase abscission zone A. thaliana 0.02 Orthogroups_2024-Update
Glyma.12G003700 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
HORVU1Hr1G079140.6 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
MA_63122g0010 No alias (at1g23460 : 261.0) Pectin lyase-like superfamily... 0.05 Orthogroups_2024-Update
Sopen10g030820 No alias Glycosyl hydrolases family 28 0.03 Orthogroups_2024-Update
Sopen12g004420 No alias Glycosyl hydrolases family 28 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000776 kinetochore IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
BP GO:0007165 signal transduction IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
BP GO:0009719 response to endogenous stimulus IEP Predicted GO
BP GO:0009725 response to hormone IEP Predicted GO
BP GO:0009733 response to auxin IEP Predicted GO
BP GO:0010033 response to organic substance IEP Predicted GO
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Predicted GO
CC GO:0031262 Ndc80 complex IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 493 547
IPR000743 Glyco_hydro_28 127 452
No external refs found!