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  5. PSME_00033093-RA

PSME_00033093-RA


Description : (at2g40370 : 637.0) putative laccase, a member of laccase family of genes (17 members in Arabidopsis).; laccase 5 (LAC5); FUNCTIONS IN: laccase activity; INVOLVED IN: response to copper ion; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 12 (TAIR:AT5G05390.1); Has 10120 Blast hits to 8186 proteins in 1337 species: Archae - 37; Bacteria - 4008; Metazoa - 431; Fungi - 3685; Plants - 1575; Viruses - 0; Other Eukaryotes - 384 (source: NCBI BLink). & (p14133|aso_cucsa : 229.0) L-ascorbate oxidase precursor (EC 1.10.3.3) (Ascorbase) (ASO) - Cucumis sativus (Cucumber) & (reliability: 1274.0) & (original description: no original description)


Gene families : OG_42_0000051 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000051_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00033093-RA

Target Alias Description ECC score Gene Family Method Actions
404075 No alias laccase 12 0.02 Orthogroups_2024-Update
404333 No alias laccase 12 0.02 Orthogroups_2024-Update
78404 No alias laccase 12 0.02 Orthogroups_2024-Update
A4A49_13107 No alias laccase-14 0.03 Orthogroups_2024-Update
A4A49_13303 No alias laccase-7 0.04 Orthogroups_2024-Update
A4A49_15209 No alias laccase-4 0.02 Orthogroups_2024-Update
A4A49_20277 No alias laccase-11 0.02 Orthogroups_2024-Update
A4A49_21564 No alias laccase-15 0.03 Orthogroups_2024-Update
At5g05390 No alias Laccase-12 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLB5] 0.02 Orthogroups_2024-Update
At5g09360 No alias Laccase-14 [Source:UniProtKB/Swiss-Prot;Acc:Q9FY79] 0.02 Orthogroups_2024-Update
Bradi2g23350 No alias laccase 17 0.02 Orthogroups_2024-Update
Bradi2g54680 No alias laccase 17 0.02 Orthogroups_2024-Update
Bradi3g59177 No alias laccase 14 0.03 Orthogroups_2024-Update
Bradi3g59210 No alias laccase 14 0.02 Orthogroups_2024-Update
Brara.E01368.1 No alias lignin laccase & EC_1.10 oxidoreductase acting on... 0.05 Orthogroups_2024-Update
Brara.J02661.1 No alias EC_1.10 oxidoreductase acting on diphenol or related... 0.04 Orthogroups_2024-Update
GRMZM2G336337 No alias laccase 12 0.02 Orthogroups_2024-Update
Glyma.07G142500 No alias Laccase/Diphenol oxidase family protein 0.03 Orthogroups_2024-Update
Glyma.07G142600 No alias Laccase/Diphenol oxidase family protein 0.02 Orthogroups_2024-Update
Glyma.12G121700 No alias Laccase/Diphenol oxidase family protein 0.03 Orthogroups_2024-Update
Glyma.14G198900 No alias laccase 3 0.04 Orthogroups_2024-Update
Glyma.18G197400 No alias Laccase/Diphenol oxidase family protein 0.03 Orthogroups_2024-Update
HORVU3Hr1G088140.1 No alias EC_1.10 oxidoreductase acting on diphenol or related... 0.02 Orthogroups_2024-Update
HORVU3Hr1G088150.1 No alias EC_1.10 oxidoreductase acting on diphenol or related... 0.02 Orthogroups_2024-Update
LOC_Os05g38420 No alias laccase precursor protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os12g15680 No alias laccase precursor protein, putative, expressed 0.03 Orthogroups_2024-Update
MA_10433807g0010 No alias (q40588|aso_tobac : 375.0) L-ascorbate oxidase precursor... 0.04 Orthogroups_2024-Update
MA_28768g0010 No alias (at2g38080 : 580.0) Encodes a protein with similarity to... 0.03 Orthogroups_2024-Update
MA_33288g0010 No alias (at5g05390 : 575.0) putative laccase, a member of... 0.04 Orthogroups_2024-Update
MA_811078g0010 No alias (at5g05390 : 660.0) putative laccase, a member of... 0.04 Orthogroups_2024-Update
MA_897132g0010 No alias (at2g40370 : 560.0) putative laccase, a member of... 0.03 Orthogroups_2024-Update
PSME_00001502-RA No alias (at2g38080 : 615.0) Encodes a protein with similarity to... 0.04 Orthogroups_2024-Update
PSME_00005164-RA No alias (at5g05390 : 649.0) putative laccase, a member of... 0.05 Orthogroups_2024-Update
PSME_00010384-RA No alias (at5g05390 : 682.0) putative laccase, a member of... 0.05 Orthogroups_2024-Update
PSME_00015480-RA No alias (at5g05390 : 777.0) putative laccase, a member of... 0.05 Orthogroups_2024-Update
PSME_00028638-RA No alias (at5g05390 : 656.0) putative laccase, a member of... 0.04 Orthogroups_2024-Update
PSME_00033274-RA No alias (at5g03260 : 805.0) putative laccase, a member of... 0.04 Orthogroups_2024-Update
Potri.016G112000 No alias Laccase/Diphenol oxidase family protein 0.04 Orthogroups_2024-Update
Potri.019G088900 No alias laccase 14 0.02 Orthogroups_2024-Update
Pp1s17_180V6 No alias laccase 90c 0.03 Orthogroups_2024-Update
Seita.8G252500.1 No alias lignin laccase & EC_1.10 oxidoreductase acting on... 0.03 Orthogroups_2024-Update
Sobic.001G422300.1 No alias lignin laccase & EC_1.10 oxidoreductase acting on... 0.03 Orthogroups_2024-Update
Sobic.004G236100.1 No alias EC_1.10 oxidoreductase acting on diphenol or related... 0.06 Orthogroups_2024-Update
Sobic.009G162800.1 No alias lignin laccase & EC_1.10 oxidoreductase acting on... 0.02 Orthogroups_2024-Update
Sobic.010G268500.1 No alias EC_1.10 oxidoreductase acting on diphenol or related... 0.03 Orthogroups_2024-Update
Sopen02g029800 No alias Multicopper oxidase 0.02 Orthogroups_2024-Update
Sopen04g028460 No alias Multicopper oxidase 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEA InterProScan predictions
MF GO:0016491 oxidoreductase activity IEA InterProScan predictions
BP GO:0055114 oxidation-reduction process IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0016829 lyase activity IEP Predicted GO
MF GO:0016840 carbon-nitrogen lyase activity IEP Predicted GO
MF GO:0016843 amine-lyase activity IEP Predicted GO
MF GO:0016844 strictosidine synthase activity IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
InterPro domains Description Start Stop
IPR011706 Cu-oxidase_2 415 549
IPR011707 Cu-oxidase_3 35 147
IPR001117 Cu-oxidase 160 310
No external refs found!