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  5. PSME_00033106-RA

PSME_00033106-RA


Description : (at1g11290 : 489.0) Pentatricopeptide Repeat Protein containing the DYW motif. Required for editing of multiple plastid transcripts. Endonuclease activity.; CHLORORESPIRATORY REDUCTION22 (CRR22); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 48258 Blast hits to 14436 proteins in 289 species: Archae - 1; Bacteria - 2; Metazoa - 166; Fungi - 164; Plants - 47192; Viruses - 0; Other Eukaryotes - 733 (source: NCBI BLink). & (q76c99|rf1_orysa : 119.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 978.0) & (original description: no original description)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00033106-RA
Cluster HCCA clusters: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
A4A49_05242 No alias pentatricopeptide repeat-containing protein 0.03 Orthogroups_2024-Update
A4A49_29893 No alias pentatricopeptide repeat-containing protein, chloroplastic 0.02 Orthogroups_2024-Update
At1g08070 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.04 Orthogroups_2024-Update
At3g03580 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.03 Orthogroups_2024-Update
Glyma.20G112100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Orthogroups_2024-Update
MA_16917g0010 No alias (at4g13650 : 578.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
MA_28607g0010 No alias (at4g02750 : 763.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
MA_501007g0010 No alias (at4g13650 : 662.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
Seita.6G228400.1 No alias processivity component *(REV7) of DNA polymerase zeta complex 0.03 Orthogroups_2024-Update
Sobic.001G347100.2 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G436600.3 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc09g010070 No alias Pentatricopeptide repeat superfamily protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc11g071370 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.02 Orthogroups_2024-Update
Sopen01g032600 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen01g033110 No alias PPR repeat 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP Predicted GO
MF GO:0003678 DNA helicase activity IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006508 proteolysis IEP Predicted GO
MF GO:0008233 peptidase activity IEP Predicted GO
MF GO:0008234 cysteine-type peptidase activity IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
BP GO:0016226 iron-sulfur cluster assembly IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
BP GO:0031163 metallo-sulfur cluster assembly IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
BP GO:0032200 telomere organization IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0060249 anatomical structure homeostasis IEP Predicted GO
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
InterPro domains Description Start Stop
IPR032867 DYW_dom 617 668
IPR002885 Pentatricopeptide_repeat 343 390
IPR002885 Pentatricopeptide_repeat 140 189
IPR002885 Pentatricopeptide_repeat 241 288
IPR002885 Pentatricopeptide_repeat 443 491
IPR002885 Pentatricopeptide_repeat 317 340
IPR002885 Pentatricopeptide_repeat 585 613
IPR002885 Pentatricopeptide_repeat 519 541
No external refs found!