PSME_00033120-RA

Description : (at1g63350 : 267.0) Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: N-terminal protein myristoylation, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing protein (InterPro:IPR015766), NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G62630.1); Has 18724 Blast hits to 16763 proteins in 698 species: Archae - 14; Bacteria - 926; Metazoa - 3029; Fungi - 209; Plants - 14107; Viruses - 4; Other Eukaryotes - 435 (source: NCBI BLink). & (reliability: 516.0) & (original description: no original description)

Gene families : OG_42_0000113 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000113_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00033120-RA
Cluster	HCCA clusters: Cluster_37

Target	Alias	Description	ECC score	Gene Family Method
At1g12210	No alias	Disease resistance protein RFL1...	0.04	Orthogroups_2024-Update
At4g10780	No alias	Putative disease resistance protein At4g10780...	0.02	Orthogroups_2024-Update
Bradi5g15560	No alias	NB-ARC domain-containing disease resistance protein	0.02	Orthogroups_2024-Update
Brara.I01184.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Brara.I05130.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Glyma.12G236500	No alias	NB-ARC domain-containing disease resistance protein	0.03	Orthogroups_2024-Update
MA_10321737g0010	No alias	(at5g05400 : 123.0) LRR and NB-ARC domains-containing...	0.04	Orthogroups_2024-Update
MA_199361g0010	No alias	(at4g26090 : 80.5) Encodes a plasma membrane protein...	0.04	Orthogroups_2024-Update
MA_31961g0010	No alias	(at5g63020 : 182.0) Disease resistance protein...	0.03	Orthogroups_2024-Update
MA_355252g0010	No alias	(at4g26090 : 192.0) Encodes a plasma membrane protein...	0.03	Orthogroups_2024-Update
MA_451961g0010	No alias	(at1g12280 : 177.0) LRR and NB-ARC domains-containing...	0.04	Orthogroups_2024-Update
MA_674039g0010	No alias	(at5g63020 : 154.0) Disease resistance protein...	0.03	Orthogroups_2024-Update
MA_9432601g0010	No alias	(at5g63020 : 105.0) Disease resistance protein...	0.03	Orthogroups_2024-Update
PSME_00004922-RA	No alias	(at1g12280 : 266.0) LRR and NB-ARC domains-containing...	0.03	Orthogroups_2024-Update
PSME_00011883-RA	No alias	(at4g27220 : 218.0) NB-ARC domain-containing disease...	0.04	Orthogroups_2024-Update
PSME_00018900-RA	No alias	no hits & (original description: no original description)	0.03	Orthogroups_2024-Update
PSME_00018989-RA	No alias	(at4g26090 : 240.0) Encodes a plasma membrane protein...	0.05	Orthogroups_2024-Update
PSME_00021066-RA	No alias	(at1g12220 : 163.0) Resistance gene, mediates resistance...	0.03	Orthogroups_2024-Update
PSME_00021517-RA	No alias	(at1g12210 : 150.0) RFL1 has high sequence similarity to...	0.04	Orthogroups_2024-Update
PSME_00027124-RA	No alias	(at4g10780 : 169.0) LRR and NB-ARC domains-containing...	0.06	Orthogroups_2024-Update
PSME_00027916-RA	No alias	(at4g27220 : 83.6) NB-ARC domain-containing disease...	0.05	Orthogroups_2024-Update
PSME_00048940-RA	No alias	(at4g27220 : 141.0) NB-ARC domain-containing disease...	0.06	Orthogroups_2024-Update
PSME_00050940-RA	No alias	(at1g12280 : 221.0) LRR and NB-ARC domains-containing...	0.04	Orthogroups_2024-Update
Potri.001G404800	No alias	LRR and NB-ARC domains-containing disease resistance protein	0.03	Orthogroups_2024-Update
Potri.T013566	No alias	NB-ARC domain-containing disease resistance protein	0.04	Orthogroups_2024-Update
Potri.T026360	No alias	NB-ARC domain-containing disease resistance protein	0.03	Orthogroups_2024-Update
Potri.T026420	No alias	NB-ARC domain-containing disease resistance protein	0.03	Orthogroups_2024-Update
Potri.T026700	No alias	NB-ARC domain-containing disease resistance protein	0.02	Orthogroups_2024-Update
Potri.T044800	No alias	NB-ARC domain-containing disease resistance protein	0.03	Orthogroups_2024-Update
Sopen08g004810	No alias	NB-ARC domain	0.03	Orthogroups_2024-Update
Sopen10g028090	No alias	NB-ARC domain	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	InterProScan predictions
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043531	ADP binding	IEA	InterProScan predictions
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000776	kinetochore	IEP	Predicted GO
MF	GO:0004126	cytidine deaminase activity	IEP	Predicted GO
MF	GO:0005319	lipid transporter activity	IEP	Predicted GO
BP	GO:0006213	pyrimidine nucleoside metabolic process	IEP	Predicted GO
BP	GO:0006216	cytidine catabolic process	IEP	Predicted GO
BP	GO:0006869	lipid transport	IEP	Predicted GO
MF	GO:0008641	ubiquitin-like modifier activating enzyme activity	IEP	Predicted GO
BP	GO:0009119	ribonucleoside metabolic process	IEP	Predicted GO
BP	GO:0009164	nucleoside catabolic process	IEP	Predicted GO
BP	GO:0009719	response to endogenous stimulus	IEP	Predicted GO
BP	GO:0009725	response to hormone	IEP	Predicted GO
BP	GO:0009733	response to auxin	IEP	Predicted GO
BP	GO:0009972	cytidine deamination	IEP	Predicted GO
BP	GO:0010033	response to organic substance	IEP	Predicted GO
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	Predicted GO
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	IEP	Predicted GO
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	IEP	Predicted GO
MF	GO:0019239	deaminase activity	IEP	Predicted GO
CC	GO:0031262	Ndc80 complex	IEP	Predicted GO
BP	GO:0034656	nucleobase-containing small molecule catabolic process	IEP	Predicted GO
BP	GO:0042454	ribonucleoside catabolic process	IEP	Predicted GO
BP	GO:0044282	small molecule catabolic process	IEP	Predicted GO
BP	GO:0046087	cytidine metabolic process	IEP	Predicted GO
BP	GO:0046131	pyrimidine ribonucleoside metabolic process	IEP	Predicted GO
BP	GO:0046133	pyrimidine ribonucleoside catabolic process	IEP	Predicted GO
BP	GO:0046135	pyrimidine nucleoside catabolic process	IEP	Predicted GO
MF	GO:0046983	protein dimerization activity	IEP	Predicted GO
BP	GO:0061024	membrane organization	IEP	Predicted GO
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	Predicted GO
BP	GO:0072529	pyrimidine-containing compound catabolic process	IEP	Predicted GO
BP	GO:0120009	intermembrane lipid transfer	IEP	Predicted GO
MF	GO:0120013	intermembrane lipid transfer activity	IEP	Predicted GO
BP	GO:1901658	glycosyl compound catabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002182	NB-ARC	166	402
IPR001611	Leu-rich_rpt	539	598

External Links

No external refs found!

PSME_00033120-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation