PSME_00033212-RA

Description : (at1g42540 : 242.0) member of Putative ligand-gated ion channel subunit family; glutamate receptor 3.3 (GLR3.3); FUNCTIONS IN: intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein, family 3 (InterPro:IPR001638), Ionotropic glutamate receptor (InterPro:IPR001320), Extracellular ligand-binding receptor (InterPro:IPR001828), GPCR, family 3, gamma-aminobutyric acid receptor, type B (InterPro:IPR002455), Glutamate receptor-related (InterPro:IPR015683), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: glutamate receptor 3.6 (TAIR:AT3G51480.1); Has 6567 Blast hits to 6430 proteins in 489 species: Archae - 28; Bacteria - 758; Metazoa - 4571; Fungi - 0; Plants - 644; Viruses - 2; Other Eukaryotes - 564 (source: NCBI BLink). & (q7xp59|glr31_orysa : 221.0) Glutamate receptor 3.1 precursor (Ligand-gated ion channel 3.1) - Oryza sativa (Rice) & (reliability: 484.0) & (original description: no original description)

Gene families : OG_42_0000065 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000065_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00033212-RA
Cluster	HCCA clusters: Cluster_52

Target	Alias	Description	ECC score	Gene Family Method
Bradi4g30880	No alias	glutamate receptor 2.7	0.03	Orthogroups_2024-Update
Glyma.13G272400	No alias	glutamate receptor 2.8	0.03	Orthogroups_2024-Update
HORVU2Hr1G064530.8	No alias	ligand-gated cation channel *(GLR)	0.03	Orthogroups_2024-Update
HORVU6Hr1G083570.16	No alias	ligand-gated cation channel *(GLR)	0.03	Orthogroups_2024-Update
LOC_Os02g02540	No alias	glutamate receptor, putative, expressed	0.03	Orthogroups_2024-Update
LOC_Os04g49570	No alias	glutamate receptor, putative, expressed	0.02	Orthogroups_2024-Update
MA_10140272g0010	No alias	no hits & (original description: no original description)	0.03	Orthogroups_2024-Update
MA_11333g0010	No alias	no hits & (original description: no original description)	0.05	Orthogroups_2024-Update
MA_354015g0010	No alias	(at1g05200 : 251.0) member of Putative ligand-gated ion...	0.03	Orthogroups_2024-Update
MA_9224859g0010	No alias	(at4g35290 : 187.0) Encodes a putative glutamate...	0.05	Orthogroups_2024-Update
PSME_00001097-RA	No alias	(at2g29120 : 619.0) member of Putative ligand-gated ion...	0.05	Orthogroups_2024-Update
PSME_00001291-RA	No alias	(at4g35290 : 534.0) Encodes a putative glutamate...	0.04	Orthogroups_2024-Update
PSME_00001292-RA	No alias	(at4g35290 : 567.0) Encodes a putative glutamate...	0.07	Orthogroups_2024-Update
PSME_00007782-RA	No alias	(at2g17260 : 247.0) Encodes a glutamate receptor....	0.11	Orthogroups_2024-Update
PSME_00009648-RA	No alias	(at4g35290 : 566.0) Encodes a putative glutamate...	0.04	Orthogroups_2024-Update
PSME_00018332-RA	No alias	(at1g05200 : 548.0) member of Putative ligand-gated ion...	0.04	Orthogroups_2024-Update
PSME_00021963-RA	No alias	(at1g05200 : 294.0) member of Putative ligand-gated ion...	0.06	Orthogroups_2024-Update
PSME_00021964-RA	No alias	(at1g05200 : 282.0) member of Putative ligand-gated ion...	0.04	Orthogroups_2024-Update
PSME_00023170-RA	No alias	(at1g42540 : 830.0) member of Putative ligand-gated ion...	0.07	Orthogroups_2024-Update
PSME_00024792-RA	No alias	(at2g29120 : 571.0) member of Putative ligand-gated ion...	0.04	Orthogroups_2024-Update
PSME_00027643-RA	No alias	(at2g29120 : 565.0) member of Putative ligand-gated ion...	0.04	Orthogroups_2024-Update
PSME_00032127-RA	No alias	(at4g35290 : 436.0) Encodes a putative glutamate...	0.06	Orthogroups_2024-Update
PSME_00037073-RA	No alias	(at2g17260 : 246.0) Encodes a glutamate receptor....	0.05	Orthogroups_2024-Update
PSME_00037074-RA	No alias	(at1g05200 : 98.6) member of Putative ligand-gated ion...	0.04	Orthogroups_2024-Update
Potri.006G172100	No alias	glutamate receptor 2.8	0.03	Orthogroups_2024-Update
Potri.006G172900	No alias	glutamate receptor 2.8	0.04	Orthogroups_2024-Update
Potri.006G268700	No alias	glutamate receptor 2.8	0.03	Orthogroups_2024-Update
Potri.011G062900	No alias	glutamate receptor 2.7	0.03	Orthogroups_2024-Update
Potri.014G028500	No alias	glutamate receptor 2.7	0.02	Orthogroups_2024-Update
Potri.018G012100	No alias	glutamate receptor 2.7	0.03	Orthogroups_2024-Update
Seita.1G346100.1	No alias	ligand-gated cation channel *(GLR)	0.03	Orthogroups_2024-Update
Seita.2G212500.1	No alias	ligand-gated cation channel *(GLR)	0.02	Orthogroups_2024-Update
Seita.2G212600.1	No alias	ligand-gated cation channel *(GLR)	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0004888	transmembrane signaling receptor activity	None	Extended
MF	GO:0004970	ionotropic glutamate receptor activity	IEA	InterProScan predictions
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005216	ion channel activity	None	Extended
MF	GO:0005230	extracellular ligand-gated ion channel activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
MF	GO:0008066	glutamate receptor activity	None	Extended
MF	GO:0015075	ion transmembrane transporter activity	None	Extended
MF	GO:0015267	channel activity	None	Extended
MF	GO:0015276	ligand-gated ion channel activity	None	Extended
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	IEA	InterProScan predictions
MF	GO:0022803	passive transmembrane transporter activity	None	Extended
MF	GO:0022824	transmitter-gated ion channel activity	None	Extended
MF	GO:0022834	ligand-gated channel activity	None	Extended
MF	GO:0022835	transmitter-gated channel activity	None	Extended
MF	GO:0022836	gated channel activity	None	Extended
MF	GO:0022838	substrate-specific channel activity	None	Extended
MF	GO:0022839	ion gated channel activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030594	neurotransmitter receptor activity	None	Extended
MF	GO:0038023	signaling receptor activity	None	Extended
MF	GO:0060089	molecular transducer activity	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Predicted GO
MF	GO:0003824	catalytic activity	IEP	Predicted GO
MF	GO:0004672	protein kinase activity	IEP	Predicted GO
MF	GO:0005319	lipid transporter activity	IEP	Predicted GO
MF	GO:0005524	ATP binding	IEP	Predicted GO
BP	GO:0006464	cellular protein modification process	IEP	Predicted GO
BP	GO:0006468	protein phosphorylation	IEP	Predicted GO
BP	GO:0006793	phosphorus metabolic process	IEP	Predicted GO
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006869	lipid transport	IEP	Predicted GO
MF	GO:0008144	drug binding	IEP	Predicted GO
MF	GO:0016301	kinase activity	IEP	Predicted GO
BP	GO:0016310	phosphorylation	IEP	Predicted GO
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Predicted GO
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Predicted GO
MF	GO:0016787	hydrolase activity	IEP	Predicted GO
MF	GO:0016887	ATPase activity	IEP	Predicted GO
MF	GO:0017076	purine nucleotide binding	IEP	Predicted GO
BP	GO:0019538	protein metabolic process	IEP	Predicted GO
MF	GO:0030554	adenyl nucleotide binding	IEP	Predicted GO
MF	GO:0032553	ribonucleotide binding	IEP	Predicted GO
MF	GO:0032555	purine ribonucleotide binding	IEP	Predicted GO
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Predicted GO
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Predicted GO
MF	GO:0036094	small molecule binding	IEP	Predicted GO
BP	GO:0036211	protein modification process	IEP	Predicted GO
MF	GO:0043167	ion binding	IEP	Predicted GO
MF	GO:0043168	anion binding	IEP	Predicted GO
BP	GO:0043412	macromolecule modification	IEP	Predicted GO
MF	GO:0043531	ADP binding	IEP	Predicted GO
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Predicted GO
BP	GO:0044267	cellular protein metabolic process	IEP	Predicted GO
BP	GO:0061024	membrane organization	IEP	Predicted GO
MF	GO:0097367	carbohydrate derivative binding	IEP	Predicted GO
BP	GO:0120009	intermembrane lipid transfer	IEP	Predicted GO
MF	GO:0120013	intermembrane lipid transfer activity	IEP	Predicted GO
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Predicted GO
MF	GO:1901265	nucleoside phosphate binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001638	Solute-binding_3/MltF_N	473	788
IPR001638	Solute-binding_3/MltF_N	33	255
IPR001320	Iontro_rcpt	789	815

External Links

No external refs found!

PSME_00033212-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation