PSME_00033304-RA

Description : (at5g02610 : 177.0) Ribosomal L29 family protein ; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L29 (InterPro:IPR001854); BEST Arabidopsis thaliana protein match is: Ribosomal L29 family protein (TAIR:AT3G09500.1). & (q8l805|rl35_wheat : 94.0) 60S ribosomal protein L35 - Triticum aestivum (Wheat) & (reliability: 354.0) & (original description: no original description)

Gene families : OG_42_0001364 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001364_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00033304-RA
Cluster	HCCA clusters: Cluster_233

Target	Alias	Description	ECC score	Gene Family Method
438324	No alias	Ribosomal L29 family protein	0.06	Orthogroups_2024-Update
A4A49_28237	No alias	60s ribosomal protein l35-4	0.05	Orthogroups_2024-Update
A4A49_63512	No alias	60s ribosomal protein l35-4	0.04	Orthogroups_2024-Update
Bradi3g43840	No alias	Ribosomal L29 family protein	0.03	Orthogroups_2024-Update
Bradi5g07170	No alias	Ribosomal L29 family protein	0.03	Orthogroups_2024-Update
Brara.A03526.1	No alias	component *(uL29) of large ribosomal-subunit (LSU) proteome	0.08	Orthogroups_2024-Update
Brara.C03268.1	No alias	component *(uL29) of large ribosomal-subunit (LSU) proteome	0.07	Orthogroups_2024-Update
Brara.E03085.1	No alias	component *(uL29) of large ribosomal-subunit (LSU) proteome	0.08	Orthogroups_2024-Update
Cre14.g617900	No alias	Ribosomal L29 family protein	0.05	Orthogroups_2024-Update
Glyma.10G291500	No alias	Ribosomal L29 family protein	0.03	Orthogroups_2024-Update
Glyma.13G133900	No alias	Ribosomal L29 family protein	0.06	Orthogroups_2024-Update
Glyma.20G240700	No alias	Ribosomal L29 family protein	0.06	Orthogroups_2024-Update
HORVU2Hr1G068120.2	No alias	component *(uL29) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Kfl00608_0050	kfl00608_0050_v1.1	(at5g02610 : 177.0) Ribosomal L29 family protein ;...	0.04	Orthogroups_2024-Update
LOC_Os02g30050	No alias	ribosomal protein L29, putative, expressed	0.03	Orthogroups_2024-Update
MA_10429159g0020	No alias	(at5g02610 : 210.0) Ribosomal L29 family protein ;...	0.05	Orthogroups_2024-Update
Potri.006G214200	No alias	Ribosomal L29 family protein	0.03	Orthogroups_2024-Update
Potri.008G048800	No alias	Ribosomal L29 family protein	0.03	Orthogroups_2024-Update
Potri.010G212300	No alias	Ribosomal L29 family protein	0.03	Orthogroups_2024-Update
Pp1s102_67V6	No alias	60s ribosomal protein l35	0.05	Orthogroups_2024-Update
Pp1s133_93V6	No alias	60s ribosomal protein l35	0.02	Orthogroups_2024-Update
Pp1s1_489V6	No alias	60s ribosomal protein l35	0.07	Orthogroups_2024-Update
Seita.7G064700.1	No alias	component *(uL29) of large ribosomal-subunit (LSU) proteome	0.08	Orthogroups_2024-Update
Sobic.004G152400.1	No alias	component *(uL29) of large ribosomal-subunit (LSU) proteome	0.08	Orthogroups_2024-Update
Sobic.004G152700.1	No alias	component *(uL29) of large ribosomal-subunit (LSU) proteome	0.07	Orthogroups_2024-Update
Solyc04g010240	No alias	60S ribosomal protein L35 (AHRD V3.3 *** RL35_EUPES)	0.07	Orthogroups_2024-Update
Solyc05g054810	No alias	60S ribosomal protein L35 (AHRD V3.3 *** RL35_EUPES)	0.08	Orthogroups_2024-Update
Sopen04g005430	No alias	Ribosomal L29 protein	0.03	Orthogroups_2024-Update
Sopen05g033280	No alias	Ribosomal L29 protein	0.05	Orthogroups_2024-Update
evm.model.contig_654.2	No alias	(at5g02610 : 134.0) Ribosomal L29 family protein ;...	0.08	Orthogroups_2024-Update
evm.model.tig00000241.79	No alias	(at3g55170 : 158.0) Ribosomal L29 family protein ;...	0.06	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	InterProScan predictions
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000774	adenyl-nucleotide exchange factor activity	IEP	Predicted GO
MF	GO:0001671	ATPase activator activity	IEP	Predicted GO
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003697	single-stranded DNA binding	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
MF	GO:0004175	endopeptidase activity	IEP	Predicted GO
MF	GO:0004298	threonine-type endopeptidase activity	IEP	Predicted GO
MF	GO:0004488	methylenetetrahydrofolate dehydrogenase (NADP+) activity	IEP	Predicted GO
CC	GO:0005839	proteasome core complex	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	Predicted GO
BP	GO:0006801	superoxide metabolic process	IEP	Predicted GO
MF	GO:0008047	enzyme activator activity	IEP	Predicted GO
BP	GO:0015985	energy coupled proton transport, down electrochemical gradient	IEP	Predicted GO
BP	GO:0015986	ATP synthesis coupled proton transport	IEP	Predicted GO
MF	GO:0016645	oxidoreductase activity, acting on the CH-NH group of donors	IEP	Predicted GO
MF	GO:0016646	oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor	IEP	Predicted GO
CC	GO:0019773	proteasome core complex, alpha-subunit complex	IEP	Predicted GO
MF	GO:0019829	cation-transporting ATPase activity	IEP	Predicted GO
BP	GO:0019941	modification-dependent protein catabolic process	IEP	Predicted GO
MF	GO:0022853	active ion transmembrane transporter activity	IEP	Predicted GO
MF	GO:0030234	enzyme regulator activity	IEP	Predicted GO
MF	GO:0042625	ATPase coupled ion transmembrane transporter activity	IEP	Predicted GO
MF	GO:0042802	identical protein binding	IEP	Predicted GO
MF	GO:0042803	protein homodimerization activity	IEP	Predicted GO
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	Predicted GO
BP	GO:0044265	cellular macromolecule catabolic process	IEP	Predicted GO
MF	GO:0044769	ATPase activity, coupled to transmembrane movement of ions, rotational mechanism	IEP	Predicted GO
MF	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	IEP	Predicted GO
MF	GO:0051087	chaperone binding	IEP	Predicted GO
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	IEP	Predicted GO
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	Predicted GO
MF	GO:0060590	ATPase regulator activity	IEP	Predicted GO
MF	GO:0070003	threonine-type peptidase activity	IEP	Predicted GO
BP	GO:0072593	reactive oxygen species metabolic process	IEP	Predicted GO
MF	GO:0098772	molecular function regulator	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001854	Ribosomal_L29/L35	74	129

External Links

No external refs found!

PSME_00033304-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation