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  5. PSME_00033428-RA

PSME_00033428-RA


Description : (at4g20140 : 253.0) Encodes GASSHO1 (GSO1), a putative leucine-rich repeat transmembrane-type receptor kinase. GSO1 and a homolog GSO2 (At5g44700) are required for the formation of a normal epidermal surface during embryogenesis.; GASSHO1 (GSO1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, transmembrane receptor protein tyrosine kinase signaling pathway, embryo development, epidermis development; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase (TAIR:AT5G44700.1); Has 301150 Blast hits to 144127 proteins in 5007 species: Archae - 193; Bacteria - 28594; Metazoa - 96322; Fungi - 11667; Plants - 129816; Viruses - 411; Other Eukaryotes - 34147 (source: NCBI BLink). & (p93194|rpk1_iponi : 206.0) Receptor-like protein kinase precursor (EC 2.7.11.1) - Ipomoea nil (Japanese morning glory) (Pharbitis nil) & (reliability: 464.0) & (original description: no original description)


Gene families : OG_42_0002753 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002753_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00033428-RA
Cluster HCCA clusters: Cluster_104

Target Alias Description ECC score Gene Family Method Actions
PSME_00003042-RA No alias (at4g20140 : 307.0) Encodes GASSHO1 (GSO1), a putative... 0.05 Orthogroups_2024-Update
PSME_00015116-RA No alias (at1g35710 : 314.0) Protein kinase family protein with... 0.05 Orthogroups_2024-Update
PSME_00027287-RA No alias (at4g20140 : 366.0) Encodes GASSHO1 (GSO1), a putative... 0.05 Orthogroups_2024-Update
PSME_00035252-RA No alias (at3g28890 : 187.0) receptor like protein 43 (RLP43);... 0.06 Orthogroups_2024-Update
PSME_00047737-RA No alias (at1g35710 : 324.0) Protein kinase family protein with... 0.05 Orthogroups_2024-Update
PSME_00049138-RA No alias (at4g20140 : 429.0) Encodes GASSHO1 (GSO1), a putative... 0.06 Orthogroups_2024-Update
PSME_00049161-RA No alias (at4g20140 : 363.0) Encodes GASSHO1 (GSO1), a putative... 0.04 Orthogroups_2024-Update
PSME_00053048-RA No alias (at5g25910 : 241.0) putative disease resistance protein... 0.04 Orthogroups_2024-Update
PSME_00054787-RA No alias (at5g62230 : 196.0) Encodes a receptor-like kinase that,... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Predicted GO
BP GO:0000045 autophagosome assembly IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
CC GO:0005758 mitochondrial intermembrane space IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0006825 copper ion transport IEP Predicted GO
BP GO:0007033 vacuole organization IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
BP GO:0009143 nucleoside triphosphate catabolic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
BP GO:0016197 endosomal transport IEP Predicted GO
BP GO:0016482 cytosolic transport IEP Predicted GO
MF GO:0016530 metallochaperone activity IEP Predicted GO
MF GO:0016531 copper chaperone activity IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
CC GO:0030906 retromer, cargo-selective complex IEP Predicted GO
CC GO:0031090 organelle membrane IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
CC GO:0031970 organelle envelope lumen IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0042147 retrograde transport, endosome to Golgi IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
MF GO:0047429 nucleoside-triphosphate diphosphatase activity IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0070925 organelle assembly IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
BP GO:1905037 autophagosome organization IEP Predicted GO
InterPro domains Description Start Stop
IPR001611 Leu-rich_rpt 462 521
IPR001611 Leu-rich_rpt 716 770
No external refs found!