PSME_00033470-RA

Description : (at4g18170 : 153.0) member of WRKY Transcription Factor; Group II-c; WRKY DNA-binding protein 28 (WRKY28); CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657), Transcription factor, WRKY group IIc (InterPro:IPR017396); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 8 (TAIR:AT5G46350.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 306.0) & (original description: no original description)

Gene families : OG_42_0000005 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00033470-RA
Cluster	HCCA clusters: Cluster_249

Target	Alias	Description	ECC score	Gene Family Method
A4A49_13518	No alias	wrky transcription factor 6	0.02	Orthogroups_2024-Update
A4A49_19262	No alias	putative wrky transcription factor 40	0.06	Orthogroups_2024-Update
A4A49_26487	No alias	putative wrky transcription factor 65	0.03	Orthogroups_2024-Update
At1g66550	No alias	Probable WRKY transcription factor 67...	0.03	Orthogroups_2024-Update
At1g80840	No alias	Probable WRKY transcription factor 40...	0.03	Orthogroups_2024-Update
At2g25000	No alias	Probable WRKY transcription factor 60...	0.03	Orthogroups_2024-Update
At2g37260	No alias	WRKY transcription factor 44...	0.04	Orthogroups_2024-Update
At3g58710	No alias	WRKY69 [Source:UniProtKB/TrEMBL;Acc:A0A178V7K8]	0.04	Orthogroups_2024-Update
Bradi1g02327	No alias	WRKY family transcription factor family protein	0.02	Orthogroups_2024-Update
Bradi2g11170	No alias	WRKY family transcription factor	0.02	Orthogroups_2024-Update
Bradi2g15877	No alias	WRKY family transcription factor	0.02	Orthogroups_2024-Update
Bradi2g16357	No alias	WRKY DNA-binding protein 71	0.02	Orthogroups_2024-Update
Bradi4g44342	No alias	WRKY DNA-binding protein 70	0.03	Orthogroups_2024-Update
Brara.A00597.1	No alias	WRKY-type transcription factor	0.03	Orthogroups_2024-Update
Brara.C02724.1	No alias	WRKY-type transcription factor	0.03	Orthogroups_2024-Update
Brara.E03626.1	No alias	WRKY-type transcription factor	0.03	Orthogroups_2024-Update
Brara.F02781.1	No alias	WRKY-type transcription factor	0.03	Orthogroups_2024-Update
Brara.H01800.1	No alias	WRKY-type transcription factor	0.02	Orthogroups_2024-Update
GRMZM2G013391	No alias	WRKY DNA-binding protein 65	0.03	Orthogroups_2024-Update
GRMZM2G024898	No alias	WRKY DNA-binding protein 14	0.02	Orthogroups_2024-Update
GRMZM2G106560	No alias	WRKY DNA-binding protein 75	0.03	Orthogroups_2024-Update
Glyma.07G133700	No alias	WRKY DNA-binding protein 49	0.03	Orthogroups_2024-Update
Glyma.18G056600	No alias	WRKY DNA-binding protein 33	0.03	Orthogroups_2024-Update
LOC_Os01g18584	No alias	WRKY9, expressed	0.02	Orthogroups_2024-Update
LOC_Os01g61080	No alias	WRKY24, expressed	0.02	Orthogroups_2024-Update
LOC_Os07g02060	No alias	WRKY29, expressed	0.02	Orthogroups_2024-Update
LOC_Os07g39480	No alias	WRKY87, expressed	0.02	Orthogroups_2024-Update
LOC_Os08g38990	No alias	WRKY30, expressed	0.02	Orthogroups_2024-Update
LOC_Os11g29870	No alias	WRKY72, expressed	0.03	Orthogroups_2024-Update
MA_120969g0010	No alias	(at1g13960 : 265.0) Encodes WRKY DNA-binding protein 4...	0.04	Orthogroups_2024-Update
PSME_00021156-RA	No alias	no hits & (original description: no original description)	0.04	Orthogroups_2024-Update
Potri.014G164300	No alias	zinc-dependent activator protein-1	0.02	Orthogroups_2024-Update
Potri.017G104800	No alias	WRKY DNA-binding protein 35	0.03	Orthogroups_2024-Update
Potri.017G149000	No alias	WRKY DNA-binding protein 27	0.03	Orthogroups_2024-Update
Seita.3G282000.1	No alias	transcription factor *(WRKY33) & WRKY-type transcription factor	0.03	Orthogroups_2024-Update
Sobic.001G083000.1	No alias	WRKY-type transcription factor	0.03	Orthogroups_2024-Update
Sobic.002G174300.1	No alias	WRKY-type transcription factor	0.03	Orthogroups_2024-Update
Sobic.004G065900.1	No alias	WRKY-type transcription factor	0.03	Orthogroups_2024-Update
Sobic.005G013600.2	No alias	WRKY-type transcription factor	0.02	Orthogroups_2024-Update
Sobic.009G234100.1	No alias	WRKY-type transcription factor	0.03	Orthogroups_2024-Update
Sobic.009G247300.2	No alias	WRKY-type transcription factor	0.03	Orthogroups_2024-Update
Sopen02g033030	No alias	WRKY DNA -binding domain	0.02	Orthogroups_2024-Update
Sopen12g002120	No alias	WRKY DNA -binding domain	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	InterProScan predictions
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003824	catalytic activity	IEP	Predicted GO
MF	GO:0004190	aspartic-type endopeptidase activity	IEP	Predicted GO
MF	GO:0004618	phosphoglycerate kinase activity	IEP	Predicted GO
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	Predicted GO
MF	GO:0005085	guanyl-nucleotide exchange factor activity	IEP	Predicted GO
MF	GO:0005086	ARF guanyl-nucleotide exchange factor activity	IEP	Predicted GO
BP	GO:0006464	cellular protein modification process	IEP	Predicted GO
BP	GO:0007186	G protein-coupled receptor signaling pathway	IEP	Predicted GO
BP	GO:0009966	regulation of signal transduction	IEP	Predicted GO
BP	GO:0010646	regulation of cell communication	IEP	Predicted GO
MF	GO:0015035	protein disulfide oxidoreductase activity	IEP	Predicted GO
MF	GO:0015036	disulfide oxidoreductase activity	IEP	Predicted GO
BP	GO:0016567	protein ubiquitination	IEP	Predicted GO
MF	GO:0016667	oxidoreductase activity, acting on a sulfur group of donors	IEP	Predicted GO
MF	GO:0016740	transferase activity	IEP	Predicted GO
MF	GO:0016774	phosphotransferase activity, carboxyl group as acceptor	IEP	Predicted GO
BP	GO:0019538	protein metabolic process	IEP	Predicted GO
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	Predicted GO
BP	GO:0023051	regulation of signaling	IEP	Predicted GO
MF	GO:0031683	G-protein beta/gamma-subunit complex binding	IEP	Predicted GO
BP	GO:0032012	regulation of ARF protein signal transduction	IEP	Predicted GO
BP	GO:0032446	protein modification by small protein conjugation	IEP	Predicted GO
BP	GO:0036211	protein modification process	IEP	Predicted GO
BP	GO:0043412	macromolecule modification	IEP	Predicted GO
BP	GO:0044267	cellular protein metabolic process	IEP	Predicted GO
MF	GO:0044877	protein-containing complex binding	IEP	Predicted GO
BP	GO:0046578	regulation of Ras protein signal transduction	IEP	Predicted GO
BP	GO:0048583	regulation of response to stimulus	IEP	Predicted GO
BP	GO:0051056	regulation of small GTPase mediated signal transduction	IEP	Predicted GO
MF	GO:0070001	aspartic-type peptidase activity	IEP	Predicted GO
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	Predicted GO
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Predicted GO
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Predicted GO
BP	GO:1902531	regulation of intracellular signal transduction	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003657	WRKY_dom	283	340

External Links

No external refs found!

PSME_00033470-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation