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  5. PSME_00033700-RA

PSME_00033700-RA


Description : (at4g11050 : 728.0) glycosyl hydrolase 9C3 (GH9C3); FUNCTIONS IN: carbohydrate binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Carbohydrate-binding (InterPro:IPR008965), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701), Carbohydrate binding domain CBM49 (InterPro:IPR019028); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9C2 (TAIR:AT1G64390.1); Has 1895 Blast hits to 1880 proteins in 271 species: Archae - 2; Bacteria - 695; Metazoa - 181; Fungi - 19; Plants - 923; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). & (q5nat0|gun2_orysa : 667.0) Endoglucanase 2 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 2) (OsGLU5) - Oryza sativa (Rice) & (reliability: 1456.0) & (original description: no original description)


Gene families : OG_42_0000077 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000077_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00033700-RA
Cluster HCCA clusters: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
144066 No alias glycosyl hydrolase 9B7 0.02 Orthogroups_2024-Update
A4A49_13767 No alias endoglucanase 17 0.03 Orthogroups_2024-Update
A4A49_19988 No alias endoglucanase 24 0.03 Orthogroups_2024-Update
At4g39000 No alias Endoglucanase 23 [Source:UniProtKB/Swiss-Prot;Acc:Q8GY58] 0.02 Orthogroups_2024-Update
Bradi1g35220 No alias glycosyl hydrolase 9B5 0.02 Orthogroups_2024-Update
Bradi3g59810 No alias glycosyl hydrolase 9B8 0.04 Orthogroups_2024-Update
Bradi4g29640 No alias glycosyl hydrolase 9B8 0.03 Orthogroups_2024-Update
Brara.I01325.1 No alias class-C endo-1,4-beta-glucanase 0.02 Orthogroups_2024-Update
Glyma.02G049000 No alias glycosyl hydrolase 9B5 0.03 Orthogroups_2024-Update
Glyma.04G025000 No alias glycosyl hydrolase 9B7 0.03 Orthogroups_2024-Update
Glyma.06G323100 No alias cellulase 3 0.03 Orthogroups_2024-Update
LOC_Os06g50140 No alias endoglucanase, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os08g02220 No alias endoglucanase, putative, expressed 0.02 Orthogroups_2024-Update
Mp8g17860.1 No alias Endoglucanase 3 OS=Oryza sativa subsp. japonica... 0.02 Orthogroups_2024-Update
PSME_00001650-RA No alias (at4g11050 : 540.0) glycosyl hydrolase 9C3 (GH9C3);... 0.04 Orthogroups_2024-Update
PSME_00016234-RA No alias (at1g70710 : 674.0) endo-1,4-beta-glucanase. Involved in... 0.03 Orthogroups_2024-Update
PSME_00040941-RA No alias (p22503|gun_phavu : 470.0) Endoglucanase precursor (EC... 0.05 Orthogroups_2024-Update
Potri.001G083200 No alias cellulase 2 0.03 Orthogroups_2024-Update
Pp1s149_10V6 No alias endo-beta- -glucanase 0.02 Orthogroups_2024-Update
Pp1s308_21V6 No alias endo- -beta- 0.02 Orthogroups_2024-Update
Sobic.003G148500.1 No alias class-B endo-1,4-beta-glucanase 0.02 Orthogroups_2024-Update
Sobic.004G244600.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Solyc07g064870 No alias Endoglucanase (AHRD V3.3 *** M1C0J8_SOLTU) 0.02 Orthogroups_2024-Update
Sopen07g024630 No alias Glycosyl hydrolase family 9 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
MF GO:0030246 carbohydrate binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001701 Glyco_hydro_9 21 480
IPR019028 CBM_49 543 621
No external refs found!