1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00033716-RA

PSME_00033716-RA


Description : (at2g44580 : 241.0) zinc ion binding; CONTAINS InterPro DOMAIN/s: Sister chromatid cohesion protein DCC1 (InterPro:IPR019128); Has 214 Blast hits to 211 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 115; Fungi - 49; Plants - 36; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). & (reliability: 482.0) & (original description: no original description)


Gene families : OG_42_0002192 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002192_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00033716-RA
Cluster HCCA clusters: Cluster_78

Target Alias Description ECC score Gene Family Method Actions
PSME_00000773-RA No alias (at2g44580 : 255.0) zinc ion binding; CONTAINS InterPro... 0.03 Orthogroups_2024-Update
PSME_00049439-RA No alias (at2g44580 : 308.0) zinc ion binding; CONTAINS InterPro... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0007064 mitotic sister chromatid cohesion IEA InterProScan predictions
CC GO:0031390 Ctf18 RFC-like complex IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006308 DNA catabolic process IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
BP GO:0009719 response to endogenous stimulus IEP Predicted GO
BP GO:0009725 response to hormone IEP Predicted GO
BP GO:0010033 response to organic substance IEP Predicted GO
InterPro domains Description Start Stop
IPR019128 Dcc1 38 350
No external refs found!