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  5. PSME_00033816-RA

PSME_00033816-RA


Description : (at2g19330 : 249.0) Encodes PIRL6, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction.; plant intracellular ras group-related LRR 6 (PIRL6); INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: plant intracellular ras group-related LRR 7 (TAIR:AT4G29880.1); Has 63918 Blast hits to 28732 proteins in 1043 species: Archae - 35; Bacteria - 6419; Metazoa - 27911; Fungi - 2141; Plants - 23572; Viruses - 21; Other Eukaryotes - 3819 (source: NCBI BLink). & (reliability: 492.0) & (original description: no original description)


Gene families : OG_42_0003768 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003768_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00033816-RA
Cluster HCCA clusters: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
MA_16171g0020 No alias (at4g29880 : 188.0) Encodes PIRL7, a member of the Plant... 0.02 Orthogroups_2024-Update
MA_9862154g0010 No alias (at4g29880 : 174.0) Encodes PIRL7, a member of the Plant... 0.03 Orthogroups_2024-Update
PSME_00002752-RA No alias (at2g19330 : 212.0) Encodes PIRL6, a member of the Plant... 0.04 Orthogroups_2024-Update
PSME_00003647-RA No alias (at4g29880 : 250.0) Encodes PIRL7, a member of the Plant... 0.03 Orthogroups_2024-Update
PSME_00017451-RA No alias (at2g19330 : 181.0) Encodes PIRL6, a member of the Plant... 0.05 Orthogroups_2024-Update
PSME_00019774-RA No alias (at4g29880 : 252.0) Encodes PIRL7, a member of the Plant... 0.04 Orthogroups_2024-Update
PSME_00047914-RA No alias (at2g19330 : 245.0) Encodes PIRL6, a member of the Plant... 0.03 Orthogroups_2024-Update
PSME_00048100-RA No alias (at4g26050 : 198.0) Encodes PIRL8, a member of the Plant... 0.05 Orthogroups_2024-Update
PSME_00049385-RA No alias (at4g26050 : 277.0) Encodes PIRL8, a member of the Plant... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0003777 microtubule motor activity IEP Predicted GO
MF GO:0004017 adenylate kinase activity IEP Predicted GO
BP GO:0006928 movement of cell or subcellular component IEP Predicted GO
BP GO:0007017 microtubule-based process IEP Predicted GO
BP GO:0007018 microtubule-based movement IEP Predicted GO
BP GO:0007062 sister chromatid cohesion IEP Predicted GO
BP GO:0007064 mitotic sister chromatid cohesion IEP Predicted GO
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0019205 nucleobase-containing compound kinase activity IEP Predicted GO
BP GO:0022402 cell cycle process IEP Predicted GO
CC GO:0031390 Ctf18 RFC-like complex IEP Predicted GO
MF GO:0050145 nucleoside monophosphate kinase activity IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
BP GO:1903047 mitotic cell cycle process IEP Predicted GO
InterPro domains Description Start Stop
IPR001611 Leu-rich_rpt 166 223
IPR001611 Leu-rich_rpt 282 341
No external refs found!