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  5. PSME_00033825-RA

PSME_00033825-RA


Description : (at5g09950 : 817.0) Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G16480.1); Has 58090 Blast hits to 13690 proteins in 227 species: Archae - 0; Bacteria - 7; Metazoa - 25; Fungi - 46; Plants - 57493; Viruses - 0; Other Eukaryotes - 519 (source: NCBI BLink). & (q76c99|rf1_orysa : 132.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1634.0) & (original description: no original description)


Gene families : OG_42_0022309 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00033825-RA
Cluster HCCA clusters: Cluster_47


Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004176 ATP-dependent peptidase activity IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006479 protein methylation IEP Predicted GO
BP GO:0006508 proteolysis IEP Predicted GO
MF GO:0008170 N-methyltransferase activity IEP Predicted GO
BP GO:0008213 protein alkylation IEP Predicted GO
MF GO:0008276 protein methyltransferase activity IEP Predicted GO
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Predicted GO
MF GO:0016278 lysine N-methyltransferase activity IEP Predicted GO
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0016567 protein ubiquitination IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
BP GO:0016571 histone methylation IEP Predicted GO
BP GO:0018022 peptidyl-lysine methylation IEP Predicted GO
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0018193 peptidyl-amino acid modification IEP Predicted GO
BP GO:0018205 peptidyl-lysine modification IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
BP GO:0032446 protein modification by small protein conjugation IEP Predicted GO
BP GO:0034968 histone lysine methylation IEP Predicted GO
MF GO:0042054 histone methyltransferase activity IEP Predicted GO
BP GO:0043414 macromolecule methylation IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 542 567
IPR002885 Pentatricopeptide_repeat 136 163
IPR002885 Pentatricopeptide_repeat 164 190
IPR002885 Pentatricopeptide_repeat 910 939
IPR002885 Pentatricopeptide_repeat 441 466
IPR002885 Pentatricopeptide_repeat 643 667
IPR002885 Pentatricopeptide_repeat 239 263
IPR002885 Pentatricopeptide_repeat 770 817
IPR002885 Pentatricopeptide_repeat 568 614
IPR002885 Pentatricopeptide_repeat 671 716
IPR002885 Pentatricopeptide_repeat 266 313
IPR002885 Pentatricopeptide_repeat 63 107
IPR002885 Pentatricopeptide_repeat 467 512
IPR002885 Pentatricopeptide_repeat 365 413
IPR032867 DYW_dom 943 1066
No external refs found!