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- PSME_00033843-RA
PSME_00033843-RA
Description : (at3g01470 : 181.0) Encodes a homeodomain leucine zipper class I (HD-Zip I) transcriptional activator involved in leaf development.; homeobox 1 (HB-1); FUNCTIONS IN: sequence-specific DNA binding, DNA binding, transcription activator activity, protein homodimerization activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to salt stress, response to blue light, positive regulation of transcription, regulation of transcription, DNA-dependent, leaf morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: stem, fruit, root, flower, leaf; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 16 (TAIR:AT4G40060.1); Has 12515 Blast hits to 12478 proteins in 547 species: Archae - 0; Bacteria - 0; Metazoa - 9969; Fungi - 258; Plants - 2039; Viruses - 5; Other Eukaryotes - 244 (source: NCBI BLink). & (reliability: 362.0) & (original description: no original description)
Expression Profile
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Co-expression Networks
| Type | Description | Actions |
| Neighborhood | Pseudotsuga release: PSME_00033843-RA | |
| Cluster | HCCA clusters: Cluster_110 | |
Expression Context Conservation (ECC)
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
| A4A49_10256 | No alias | homeobox-leucine zipper protein hat5 | 0.03 | Orthogroups_2024-Update | |
| A4A49_14998 | No alias | homeobox-leucine zipper protein hat7 | 0.03 | Orthogroups_2024-Update | |
| A4A49_24322 | No alias | homeobox-leucine zipper protein athb-13 | 0.03 | Orthogroups_2024-Update | |
| At3g61890 | No alias | HB-12 [Source:UniProtKB/TrEMBL;Acc:A0A178VND2] | 0.03 | Orthogroups_2024-Update | |
| Brara.B00590.1 | No alias | HD-ZIP I/II-type transcription factor | 0.03 | Orthogroups_2024-Update | |
| Brara.B04002.1 | No alias | HD-ZIP I/II-type transcription factor | 0.03 | Orthogroups_2024-Update | |
| Brara.C00130.1 | No alias | regulatory protein *(LMI1) of floral meristem identity... | 0.03 | Orthogroups_2024-Update | |
| Brara.I04578.1 | No alias | HD-ZIP I/II-type transcription factor | 0.02 | Orthogroups_2024-Update | |
| GRMZM2G122076 | No alias | homeobox 1 | 0.02 | Orthogroups_2024-Update | |
| HORVU4Hr1G078410.2 | No alias | HD-ZIP I/II-type transcription factor | 0.02 | Orthogroups_2024-Update | |
| HORVU6Hr1G072810.6 | No alias | HD-ZIP I/II-type transcription factor | 0.05 | Orthogroups_2024-Update | |
| LOC_Os02g49700 | No alias | homeobox associated leucine zipper, putative, expressed | 0.02 | Orthogroups_2024-Update | |
| LOC_Os08g37580 | No alias | homeobox associated leucine zipper, putative, expressed | 0.04 | Orthogroups_2024-Update | |
| MA_130615g0020 | No alias | (at2g22430 : 152.0) Encodes a homeodomain leucine zipper... | 0.03 | Orthogroups_2024-Update | |
| MA_19453g0040 | No alias | (at3g01470 : 183.0) Encodes a homeodomain leucine zipper... | 0.04 | Orthogroups_2024-Update | |
| MA_799187g0010 | No alias | no hits & (original description: no original description) | 0.04 | Orthogroups_2024-Update | |
| PSME_00044412-RA | No alias | (at1g26960 : 130.0) Encodes a homeodomain leucine zipper... | 0.03 | Orthogroups_2024-Update | |
| Potri.005G126100 | No alias | homeobox protein 21 | 0.03 | Orthogroups_2024-Update | |
| Potri.006G117700 | No alias | homeobox 51 | 0.03 | Orthogroups_2024-Update | |
| Potri.007G029500 | No alias | homeobox protein 40 | 0.05 | Orthogroups_2024-Update | |
| Potri.012G023700 | No alias | homeobox 7 | 0.02 | Orthogroups_2024-Update | |
| Pp1s108_47V6 | No alias | homeobox-leucine zipper protein hat7 | 0.02 | Orthogroups_2024-Update | |
| Seita.6G145000.1 | No alias | HD-ZIP I/II-type transcription factor | 0.04 | Orthogroups_2024-Update | |
| Solyc03g113270 | No alias | LEVAHOX1G L.esculentum homeobox | 0.03 | Orthogroups_2024-Update | |
| Solyc04g005800 | No alias | Homeobox leucine zipper family protein (AHRD V3.3 ***... | 0.02 | Orthogroups_2024-Update | |
| Sopen01g040080 | No alias | Homeobox domain | 0.02 | Orthogroups_2024-Update | |
| Sopen05g002940 | No alias | Homeobox domain | 0.03 | Orthogroups_2024-Update | |
Functional Annotation
| Type | GO Term | Name | Evidence | Source |
| MF | GO:0003674 | molecular_function | None | Extended |
| MF | GO:0003676 | nucleic acid binding | None | Extended |
| MF | GO:0003677 | DNA binding | IEA | InterProScan predictions |
| MF | GO:0003700 | DNA-binding transcription factor activity | IEA | InterProScan predictions |
| MF | GO:0005488 | binding | None | Extended |
| BP | GO:0006355 | regulation of transcription, DNA-templated | IEA | InterProScan predictions |
| BP | GO:0008150 | biological_process | None | Extended |
| BP | GO:0009889 | regulation of biosynthetic process | None | Extended |
| BP | GO:0010468 | regulation of gene expression | None | Extended |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | None | Extended |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | None | Extended |
| BP | GO:0019222 | regulation of metabolic process | None | Extended |
| BP | GO:0031323 | regulation of cellular metabolic process | None | Extended |
| BP | GO:0031326 | regulation of cellular biosynthetic process | None | Extended |
| MF | GO:0043565 | sequence-specific DNA binding | IEA | InterProScan predictions |
| BP | GO:0050789 | regulation of biological process | None | Extended |
| BP | GO:0050794 | regulation of cellular process | None | Extended |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | None | Extended |
| BP | GO:0051252 | regulation of RNA metabolic process | None | Extended |
| BP | GO:0060255 | regulation of macromolecule metabolic process | None | Extended |
| BP | GO:0065007 | biological regulation | None | Extended |
| BP | GO:0080090 | regulation of primary metabolic process | None | Extended |
| MF | GO:0097159 | organic cyclic compound binding | None | Extended |
| MF | GO:0140110 | transcription regulator activity | None | Extended |
| MF | GO:1901363 | heterocyclic compound binding | None | Extended |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | None | Extended |
| BP | GO:2000112 | regulation of cellular macromolecule biosynthetic process | None | Extended |
| BP | GO:2001141 | regulation of RNA biosynthetic process | None | Extended |
| Type | GO Term | Name | Evidence | Source |
| MF | GO:0005506 | iron ion binding | IEP | Predicted GO |
| BP | GO:0006721 | terpenoid metabolic process | IEP | Predicted GO |
| MF | GO:0008661 | 1-deoxy-D-xylulose-5-phosphate synthase activity | IEP | Predicted GO |
| BP | GO:0016114 | terpenoid biosynthetic process | IEP | Predicted GO |
| MF | GO:0016491 | oxidoreductase activity | IEP | Predicted GO |
| MF | GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | IEP | Predicted GO |
| MF | GO:0016744 | transferase activity, transferring aldehyde or ketonic groups | IEP | Predicted GO |
| MF | GO:0016757 | transferase activity, transferring glycosyl groups | IEP | Predicted GO |
| MF | GO:0016758 | transferase activity, transferring hexosyl groups | IEP | Predicted GO |
| MF | GO:0020037 | heme binding | IEP | Predicted GO |
| MF | GO:0043169 | cation binding | IEP | Predicted GO |
| MF | GO:0046872 | metal ion binding | IEP | Predicted GO |
| MF | GO:0046906 | tetrapyrrole binding | IEP | Predicted GO |
| MF | GO:0046914 | transition metal ion binding | IEP | Predicted GO |
| BP | GO:0055114 | oxidation-reduction process | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
| IPR001356 | Homeobox_dom | 117 | 170 |
| IPR003106 | Leu_zip_homeo | 172 | 213 |
