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PSME_00034107-RA


Description : (at2g22070 : 465.0) pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G25360.1); Has 47939 Blast hits to 14346 proteins in 287 species: Archae - 0; Bacteria - 20; Metazoa - 98; Fungi - 122; Plants - 46979; Viruses - 0; Other Eukaryotes - 720 (source: NCBI BLink). & (q76c99|rf1_orysa : 117.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 930.0) & (original description: no original description)


Gene families : OG_42_0012848 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0012848_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00034107-RA
Cluster HCCA clusters: Cluster_207

Target Alias Description ECC score Gene Family Method Actions
MA_812716g0010 No alias (at2g22070 : 538.0) pentatricopeptide (PPR)... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004347 glucose-6-phosphate isomerase activity IEP Predicted GO
MF GO:0004455 ketol-acid reductoisomerase activity IEP Predicted GO
MF GO:0004506 squalene monooxygenase activity IEP Predicted GO
BP GO:0006094 gluconeogenesis IEP Predicted GO
BP GO:0009081 branched-chain amino acid metabolic process IEP Predicted GO
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Predicted GO
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Predicted GO
BP GO:0019319 hexose biosynthetic process IEP Predicted GO
BP GO:0046364 monosaccharide biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 230 255
IPR002885 Pentatricopeptide_repeat 130 177
IPR002885 Pentatricopeptide_repeat 261 309
IPR002885 Pentatricopeptide_repeat 463 510
IPR002885 Pentatricopeptide_repeat 537 561
IPR002885 Pentatricopeptide_repeat 102 129
IPR002885 Pentatricopeptide_repeat 602 631
IPR032867 DYW_dom 635 689
No external refs found!