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  5. PSME_00034308-RA

PSME_00034308-RA


Description : (at5g14230 : 508.0) CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 2 in Arabidopsis thaliana (TAIR:AT5G57740.1); Has 66374 Blast hits to 25358 proteins in 1201 species: Archae - 121; Bacteria - 8133; Metazoa - 29530; Fungi - 5885; Plants - 3349; Viruses - 785; Other Eukaryotes - 18571 (source: NCBI BLink). & (reliability: 1016.0) & (original description: no original description)


Gene families : OG_42_0001604 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001604_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00034308-RA
Cluster HCCA clusters: Cluster_716

Target Alias Description ECC score Gene Family Method Actions
PSME_00048745-RA No alias (at5g14230 : 508.0) CONTAINS InterPro DOMAIN/s: Ankyrin... 0.03 Orthogroups_2024-Update
PSME_00049021-RA No alias (at5g14230 : 317.0) CONTAINS InterPro DOMAIN/s: Ankyrin... 0.04 Orthogroups_2024-Update
Seita.7G147600.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Sopen02g038600 No alias Ankyrin repeats (3 copies) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP Predicted GO
MF GO:0004527 exonuclease activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006812 cation transport IEP Predicted GO
MF GO:0008171 O-methyltransferase activity IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Predicted GO
BP GO:0030001 metal ion transport IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR020683 Ankyrin_rpt-contain_dom 419 497
IPR020683 Ankyrin_rpt-contain_dom 325 399
IPR020683 Ankyrin_rpt-contain_dom 237 302
No external refs found!